Evidence map›Paper›PMID 34928154›Full record

ArticleThe journal of physical chemistry letters2021

Entropy in the Molecular Recognition of Membrane Protein-Lipid Interactions.

Pei Qiao, Samantha Schrecke, Thomas Walker, Jacob W McCabe, Jixing Lyu, Yun Zhu, Tianqi Zhang, Smriti Kumar, David Clemmer, David H Russell and 1 more

Abstract read
In one paragraph

Article in The journal of physical chemistry letters, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. TREK2 Lipid Binding Preferences Revealed by Native Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Pei QiaoDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843, United States.
Samantha SchreckeDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, United States.
Thomas WalkerDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, United States.
Jacob W McCabeDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, United States.ORCID https://orcid.org/0000-0002-5022-2280
Jixing LyuDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, United States.
Yun ZhuDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, United States.
Tianqi ZhangDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, United States.
Smriti KumarDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, United States.
David ClemmerDepartment of Chemistry, Indiana University, Bloomington, Indiana 47405, United States.ORCID https://orcid.org/0000-0003-4039-1360
David H RussellDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, United States.ORCID https://orcid.org/0000-0003-0830-3914
Arthur LaganowskyDepartment of Chemistry, Texas A&M University, College Station, Texas 77843, United States.ORCID https://orcid.org/0000-0001-5012-5547

Funding

Waters Select Series Cyclic IMS for P41 Native MS Resource Application to Alzheimer's DiseaseP41GM128577 · NIGMS · OHIO STATE UNIVERSITY · PI SOMOGYI, ARPAD · 2018 to 2022
$7.6M
Native ion mobility mass spectrometry studies of potassium inward rectifier channels: insight into gating and lipid bindingDP2GM123486 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI LAGANOWSKY, ARTHUR D · 2016 to 2016
$2.2M
Development of high resolution mobility measurements for structural biologyR01GM121751 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI CLEMMER, DAVID E., LAGANOWSKY, ARTHUR D · 2017 to 2020
$1.7M
Innovative Native Ion Mobility Approaches for Transformational Measurements in Structural BiologyR01GM138863 · NIGMS · TEXAS A&M UNIVERSITY · PI CLOWERS, BRIAN, LAGANOWSKY, ARTHUR D · 2020 to 2023
$1.2M
NIGMS NIH HHS DP2 GM123486NIGMS NIH HHS P41 GM128577NIGMS NIH HHS R01 GM121751NIGMS NIH HHS R01 GM138863
6 · The paper itself

Abstract

Understanding the molecular driving forces that underlie membrane protein-lipid interactions requires the characterization of their binding thermodynamics. Here, we employ variable-temperature native mass spectrometry to determine the thermodynamics of lipid binding events to the human G-protein-gated inward rectifier potassium channel, Kir3.2. The channel displays distinct thermodynamic strategies to engage phosphatidylinositol (PI) and phosphorylated forms thereof. The addition of a 4'-phosphate to PI results in an increase in favorable entropy. PI with two or more phosphates exhibits more complex binding, where lipids appear to bind two nonidentical sites on Kir3.2. Remarkably, the interaction of 4,5-bisphosphate PI with Kir3.2 is solely driven by a large, favorable change in entropy. Installment of a 3'-phosphate to PI(4,5)P

Indexed as

ThermodynamicsCarbohydrate ConformationG Protein-Coupled Inwardly-Rectifying Potassium ChannelsHumansLipidsG Protein-Coupled Inwardly-Rectifying Potassium ChannelsKCNJ6 protein, humanLipids

Identifiers

PMID34928154
PMCPMC8905501

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.