Evidence map›Paper›PMID 34968947›Full record

ReviewCurrent opinion in pharmacology2022

The active kinome: The modern view of how active protein kinase networks fit in biological research.

Khaled Alganem, Abdul-Rizaq Hamoud, Justin F Creeden, Nicholas D Henkel, Ali S Imami, Alex W Joyce, William G Ryan V, Jacob B Rethman, Rammohan Shukla, Sinead M O'Donovan and 2 more

Abstract readReview
In one paragraph

Review in Current opinion in pharmacology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Pathway Analysis Interpretation in the Multi-Omic Era.Biotech (Basel (Switzerland)) · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A web portal for exploring kinase-substrate interactions.NPJ systems biology and applications · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. CDK6 activity in a recurring convergent kinase network motif.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2023
    Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Khaled AlganemDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
Abdul-Rizaq HamoudDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
Justin F CreedenDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
Nicholas D HenkelDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
Ali S ImamiDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
Alex W JoyceDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
William G Ryan VDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
Jacob B RethmanDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
Rammohan ShuklaDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
Sinead M O'DonovanDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA.
Jarek MellerDepartment of Biomedical Informatics, University of Cincinnati, Cincinnati, OH, USA; Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA; Division of Biostatistics and Bioinformatics, Department of Environmental and Public Health Sciences, University of Cincinnati, Cincinnati, OH, USA; Department of Pharmacology and System Biology, College of Medicine, University of Cincinnati, Cincinnati, OH, USA; Department of Electrical Engineering and Computer Science, College of Engineering and Applied Sciences, University of Cincinnati, Cincinnati, OH, USA.
Robert McCullumsmithDepartment of Neurosciences, University of Toledo College of Medicine, Toledo, OH, USA; Neurosciences Institute, ProMedica, Toledo, OH, USA. Electronic address: robert.mccullumsmith@utoledo.edu.

Funding

Translational assessment of brain bioenergetic function in schizophreniaR01MH121102 · NIMH · UNIVERSITY OF MARYLAND BALTIMORE · PI MARANO, CHRISTOPHER, MCCULLUMSMITH, ROBERT E · 2020 to 2024
$3.7M
Development of Attenuated Furoxans as Novel Therapies for Alzheimer's DiseaseR01AG057598 · NIA · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI SCHIEFER, ISAAC T · 2018 to 2022
$2.3M
Cell-specific analysis of sub-kinomes in schizophreniaR01MH107487 · NIMH · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI MCCULLUMSMITH, ROBERT E, MELLER, JAREK · 2016 to 2020
$1.9M
NIA NIH HHS R01 AG057598NIMH NIH HHS R01 MH107487NIMH NIH HHS R01 MH121102
6 · The paper itself

Abstract

Biological regulatory networks are dynamic, intertwined, and complex systems making them challenging to study. While quantitative measurements of transcripts and proteins are key to investigate the state of a biological system, they do not inform the "active" state of regulatory networks. In consideration of that fact, "functional" proteomics assessments are needed to decipher active regulatory processes. Phosphorylation, a key post-translation modification, is a reversible regulatory mechanism that controls the functional state of proteins. Recent advancements of high-throughput protein kinase activity profiling platforms allow for a broad assessment of protein kinase networks in complex biological systems. In conjunction with sophisticated computational modeling techniques, these profiling platforms provide datasets that inform the active state of regulatory systems in disease models and highlight potential drug targets. Taken together, system-wide profiling of protein kinase activity has become a critical component of modern molecular biology research and presents a promising avenue for drug discovery.

Indexed as

Protein KinasesProteomicsComputer SimulationDrug DiscoveryHumansProteinsProtein KinasesProteinsBioinformaticsPamChipPamStationPost-translational modificationProtein array

Identifiers

PMID34968947
PMCPMC9438800

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.