Evidence map›Paper›PMID 34983392›Full record

ArticleBMC genomics2022

Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration.

Aundrea K Westfall, Blair W Perry, Abu H M Kamal, Nicole R Hales, Jarren C Kay, Madhab Sapkota, Drew R Schield, Mark W Pellegrino, Stephen M Secor, Saiful M Chowdhury and 1 more

Abstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Aundrea K WestfallDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Blair W PerryDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Abu H M KamalAdvanced Technology Cores, Baylor College of Medicine, Houston, TX, USA.
Nicole R HalesDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Jarren C KayDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL, USA.
Madhab SapkotaDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Drew R SchieldDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Mark W PellegrinoDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Stephen M SecorDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL, USA.
Saiful M ChowdhuryDepartment of Chemistry and Biochemistry, University of Texas at Arlington, Arlington, TX, USA.
Todd A CastoeDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA. todd.castoe@uta.edu.ORCID http://orcid.org/0000-0002-5912-1574

Funding

Mechanisms of host protection during infection via the mitochondrial unfolded protein responseR35GM128885 · NIGMS · UNIVERSITY OF TEXAS ARLINGTON · PI Mark Watson Pellegrino · 2018 to 2026
$3.0M
National Science Foundation IOS-0466139National Science Foundation IOS-1656138National Science Foundation IOS-655735NIGMS NIH HHS R35 GM128885
6 · The paper itself

Abstract

backgroundSnakes exhibit extreme intestinal regeneration following months-long fasts that involves unparalleled increases in metabolism, function, and tissue growth, but the specific molecular control of this process is unknown. Understanding the mechanisms that coordinate these regenerative phenotypes provides valuable opportunities to understand critical pathways that may control vertebrate regeneration and novel perspectives on vertebrate regenerative capacities.

resultsHere, we integrate a comprehensive set of phenotypic, transcriptomic, proteomic, and phosphoproteomic data from boa constrictors to identify the mechanisms that orchestrate shifts in metabolism, nutrient uptake, and cellular stress to direct phases of the regenerative response. We identify specific temporal patterns of metabolic, stress response, and growth pathway activation that direct regeneration and provide evidence for multiple key central regulatory molecules kinases that integrate these signals, including major conserved pathways like mTOR signaling and the unfolded protein response.

conclusionCollectively, our results identify a novel switch-like role of stress responses in intestinal regeneration that forms a primary regulatory hub facilitating organ regeneration and could point to potential pathways to understand regenerative capacity in vertebrates.

Indexed as

BoidaeProteomicsAnimalsRegenerationSignal TransductionTranscriptomemTORNRF2PhosphoproteomicsRNAseqUnfolded protein response

Identifiers

PMID34983392
PMCPMC8725436

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.