Evidence map›Paper›PMID 35013170›Full record

ArticleNature communications2022

An assembly of nuclear bodies associates with the active VSG expression site in African trypanosomes.

James Budzak, Robert Jones, Christian Tschudi, Nikolay G Kolev, Gloria Rudenko

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. A factor integrating transcription and repression of surface antigen genes in African trypanosomes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. ML-792 impairsFrontiers in cellular and infection microbiology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

James BudzakDepartment of Life Sciences, Sir Alexander Fleming Building, Imperial College London, South Kensington, London, SW7 2AZ, UK.
Robert JonesDepartment of Life Sciences, Sir Alexander Fleming Building, Imperial College London, South Kensington, London, SW7 2AZ, UK.
Christian TschudiDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06536, USA.ORCID http://orcid.org/0000-0002-9365-5254
Nikolay G KolevDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06536, USA.
Gloria RudenkoDepartment of Life Sciences, Sir Alexander Fleming Building, Imperial College London, South Kensington, London, SW7 2AZ, UK. gloria.rudenko@imperial.ac.uk.ORCID http://orcid.org/0000-0003-1884-4933

Funding

TRANSCRIPTION AND RNA PROCESSING IN TRYPANOSOMESR01AI028798 · NIAID · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 1990 to 2020
$10.9M
Mechanism of Infectivity Acquisition in African TrypanosomesR01AI110325 · NIAID · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 2014 to 2023
$4.4M
RNA METABOLISM IN TRYPANOSOMESR37AI028798 · NIAID · YALE UNIVERSITY · PI ULLU, ELISABETTA · 2010 to 2013
$2.9M
Control of VSG pre-mRNA processing in infectious Trypanosoma bruceiR01AI165480 · NIAID · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 2021 to 2025
$2.1M
Biotechnology and Biological Sciences Research Council BB/L015129/1NIAID NIH HHS R01 AI028798NIAID NIH HHS R01 AI110325NIAID NIH HHS R01 AI165480NIAID NIH HHS R37 AI028798Wellcome Trust 095161Wellcome Trust 108445/Z/15/ZWellcome Trust 212211/Z/18/Z
6 · The paper itself

Abstract

A Variant Surface Glycoprotein (VSG) coat protects bloodstream form Trypanosoma brucei. Prodigious amounts of VSG mRNA (~7-10% total) are generated from a single RNA polymerase I (Pol I) transcribed VSG expression site (ES), necessitating extremely high levels of localised splicing. We show that splicing is required for processive ES transcription, and describe novel ES-associated T. brucei nuclear bodies. In bloodstream form trypanosomes, the expression site body (ESB), spliced leader array body (SLAB), NUFIP body and Cajal bodies all frequently associate with the active ES. This assembly of nuclear bodies appears to facilitate the extraordinarily high levels of transcription and splicing at the active ES. In procyclic form trypanosomes, the NUFIP body and SLAB do not appear to interact with the Pol I transcribed procyclin locus. The congregation of a restricted number of nuclear bodies at a single active ES, provides an attractive mechanism for how monoallelic ES transcription is mediated.

Indexed as

RNA SplicingTranscription, GeneticCells, CulturedGene Expression RegulationMembrane GlycoproteinsNuclear BodiesOrganisms, Genetically ModifiedProtozoan ProteinsRNA, MessengerRNA Polymerase ITrypanosoma brucei bruceiVariant Surface Glycoproteins, TrypanosomaMembrane Glycoproteinsprocyclic acidic repetitive protein, TrypanosomaProtozoan ProteinsRNA, MessengerRNA Polymerase IVariant Surface Glycoproteins, Trypanosoma

Identifiers

PMID35013170
PMCPMC8748868

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.