Evidence map›Paper›PMID 35039556›Full record

ArticleScientific reports2022

Quorum sensing and iron-dependent coordinated control of autoinducer-2 production via small RNA RyhB in Vibrio vulnificus.

Keun-Woo Lee, Yancheng Wen, Na-Young Park, Kun-Soo Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.0field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Keun-Woo LeeDepartment of Life Sciences, Sogang University, Baekbeom-Ro, Mapo-Gu, Seoul, 121-742, Korea.
Yancheng WenDepartment of Life Sciences, Sogang University, Baekbeom-Ro, Mapo-Gu, Seoul, 121-742, Korea.
Na-Young ParkDepartment of Life Sciences, Sogang University, Baekbeom-Ro, Mapo-Gu, Seoul, 121-742, Korea.
Kun-Soo KimDepartment of Life Sciences, Sogang University, Baekbeom-Ro, Mapo-Gu, Seoul, 121-742, Korea. kskim@sogang.ac.kr.
Sogang University · KRFujian Medical University · CN

Funding

National Research Foundation of Korea NRF-2019R1A2C2084282
6 · The paper itself

Abstract

Roles for the non-coding small RNA RyhB in quorum-sensing and iron-dependent gene modulation in the human pathogen V. vulnificus were assessed in this study. Both the quorum sensing master regulator SmcR and the Fur-iron complex were observed to bind to the region upstream of the non-coding small RNA RyhB gene to repress expression, which suggests that RyhB is associated with both quorum-sensing and iron-dependent signaling in this pathogen. We found that expression of LuxS, which is responsible for the biosynthesis of autoinducer-2 (AI-2), was higher in wild type than in a ryhB-deletion isotype. RyhB binds directly to the 5'-UTR (untranslated region) of the luxS transcript to form a heteroduplex, which not only stabilizes luxS mRNA but also disrupts the secondary structure that normally obscures the translational start codon and thereby allows translation of LuxS to begin. The binding of RyhB to luxS mRNA requires the chaperone protein Hfq, which stabilizes RyhB. These results demonstrate that the small RNA RyhB is a key element associated with feedback control of AI-2 production, and that it inhibits quorum-sensing signaling in an iron-dependent manner. This study, taken together with previous studies, shows that iron availability and cell density signals are funneled to SmcR and RyhB, and that these regulators coordinate cognate signal pathways that result in the proper balance of protein expression in response to environmental conditions.

Indexed as

5' Untranslated RegionsBacterial ProteinsCarbon-Sulfur LyasesGene Expression Regulation, BacterialGenes, BacterialHomoserineIronLactonesQuorum SensingRNA, MessengerRNA, Small UntranslatedSignal TransductionVibrio vulnificus5' Untranslated RegionsBacterial ProteinsCarbon-Sulfur LyasesHomoserineIronLactonesLuxS protein, BacteriaN-octanoylhomoserine lactoneRNA, MessengerRNA, Small Untranslated

Identifiers

PMID35039556
PMCPMC8764119
OpenAlexW4220707098

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.