Evidence map›Paper›PMID 35041298›Full record

ArticleTransboundary and emerging diseases2022

Emerging and well-characterized chlamydial infections detected in a wide range of wild Australian birds.

Vasilli Kasimov, Yalun Dong, Renfu Shao, Aaron Brunton, Susan I Anstey, Clancy Hall, Gareth Chalmers, Gabriel Conroy, Rosemary Booth, Peter Timms and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Transboundary and emerging diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Current status and future directions ofFrontiers in veterinary science · 2026
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  9. Draft genomes of novel avianMicrobial genomics · 2023
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  11. Whole-genome sequencing ofMicrobial genomics · 2023
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  12. Annals of translational medicine · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Vasilli KasimovSchool of Science, Technology and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
Yalun DongSchool of Science, Technology and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
Renfu ShaoSchool of Science, Technology and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
Aaron BruntonSchool of Science, Technology and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
Susan I AnsteySchool of Science, Technology and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
Clancy HallSchool of Science, Technology and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
Gareth ChalmersSchool of Science, Technology and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
Gabriel ConroySchool of Science, Technology and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
Rosemary BoothAustralia Zoo Wildlife Hospital, Beerwah, Australia.
Peter TimmsGenecology Research Centre, University of the Sunshine Coast, Sippy Downs, Australia.
Martina JelocnikGenecology Research Centre, University of the Sunshine Coast, Sippy Downs, Australia.ORCID https://orcid.org/0000-0003-1340-2562
University of the Sunshine Coast · AUAustralia Zoo · AU

Funding

Australian Research Council DE190100238
6 · The paper itself

Abstract

Birds can act as successful long-distance vectors and reservoirs for numerous zoonotic bacterial, parasitic and viral pathogens, which can be a concern given the interconnectedness of animal, human and environmental health. Examples of such avian pathogens are members of the genus Chlamydia. Presently, there is a lack of research investigating chlamydial infections in Australian wild and captive birds and the subsequent risks to humans and other animals. In our current study, we investigated the prevalence and genetic diversity of chlamydial organisms infecting wild birds from Queensland and the rate of co-infections with beak and feather disease virus (BFDV). We screened 1114 samples collected from 564 different birds from 16 orders admitted to the Australia Zoo Wildlife Hospital from May 2019 to February 2021 for Chlamydia and BFDV. Utilizing species-specific quantitative polymerase chain reaction (qPCR) assays, we revealed an overall Chlamydiaceae prevalence of 29.26% (165/564; 95% confidence interval (CI) 25.65-33.14), including 3.19% (18/564; 95% CI 2.03-4.99%) prevalence of the zoonotic Chlamydia psittaci. Chlamydiaceae co-infection with BFDV was detected in 9.75% (55/564; 95% CI 7.57-12.48%) of the birds. Molecular characterization of the chlamydial 16S rRNA and ompA genes identified C. psittaci, in addition to novel and other genetically diverse Chlamydia species: avian Chlamydia abortus, Ca. Chlamydia ibidis and Chlamydia pneumoniae, all detected for the first time in Australia within a novel avian host range (crows, figbirds, herons, kookaburras, lapwings and shearwaters). This study shows that C. psittaci and other emerging Chlamydia species are prevalent in a wider range of avian hosts than previously anticipated, potentially increasing the risk of spill-over to Australian wildlife, livestock and humans. Going forward, we need to further characterize C. psittaci and other emerging Chlamydia species to determine their exact genetic identity, potential reservoirs, and factors influencing infection spill-over.

Indexed as

Chlamydia InfectionsChlamydophila psittaciCircovirusAnimalsAnimals, WildAustraliaBirdsHumansRNA, Ribosomal, 16SRNA, Ribosomal, 16Sbeak and feather disease virusChlamydiaChlamydia psittacigenetic diversityinfectionswild birds

Identifiers

PMID35041298
PMCPMC9786873
OpenAlexW4206150314

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.