Evidence map›Paper›PMID 35043389›Full record

ArticleThe Journal of pathology2022

Proteomic profiling identifies novel diagnostic biomarkers and molecular subtypes for mucinous tubular and spindle cell carcinoma of the kidney.

Huiya Xu, Wei Li, Chongmei Zhu, Na Cheng, Xiaoxia Li, Fengyun Hao, Junfeng Zhu, Liyun Huang, Ran Wang, Liantang Wang and 2 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of pathology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. [Mucinous tubular and spindle cell carcinoma of kidney: Clinicopathology and prognosis].Beijing da xue xue bao. Yi xue ban = Journal of Peking University. Health sciences · 2023
    Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Huiya Xu *Department of Pathology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, PR China.ORCID 0000-0002-5367-627X
Wei Li *Department of Pathology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, PR China.
Chongmei Zhu *Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangzhou, PR China.
Na ChengDepartment of Pathology, The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, PR China.
Xiaoxia LiDepartment of Pathology, Affiliated Hospital of Jining Medical University, Jining, PR China.
Fengyun HaoDepartment of Pathology, The Affiliated Hospital of Qingdao University, Qingdao, PR China.
Junfeng ZhuDepartment of Pathology, The Seventh Affiliated Hospital, Sun Yat-sen University, Shenzhen, PR China.
Liyun HuangSun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangzhou, PR China.
Ran WangDepartment of Pathology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, PR China.
Liantang WangDepartment of Pathology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, PR China.
Zhenhua LuoInstitute of Precision Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, PR China.
Fen WangDepartment of Pathology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, PR China.ORCID 0000-0002-8685-7624
Sun Yat-sen University · CNAffiliated Hospital of Jining Medical University · CNQingdao University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mucinous tubular and spindle cell carcinoma (MTSCC) is a relatively rare renal epithelial neoplasm resembling type 1 papillary renal cell carcinoma (PRCC) morphologically and immunohistochemically. The accurate diagnosis of MTSCC remains a challenge. Here, by using proteomic profiling, we characterized MTSCC and PRCC to identify diagnostic biomarkers. We found that the MTSCC tumor proteome was significantly enriched in B-cell-mediated immunity when compared with the proteome of adjacent normal tissues of MTSCC or tumors of PRCC. Importantly, we identified MZB1, VCAN, and SOSTDC1 as diagnostic biomarkers to distinguish MTSCC from the solid variant of type 1 PRCC, with an AUC of 0.985 when combined. MZB1 was inversely correlated with tumor clinical stage and may play an anti-tumor role by activating the complement system. Finally, unsupervised clustering revealed two molecular subtypes of MTSCC, displaying different morphology, expression signatures of oxidative phosphorylation, and aggravation. In summary, our analyses identified a three-protein diagnostic panel and molecular subtypes for MTSCC. © 2022 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.

Indexed as

Adenocarcinoma, MucinousCarcinoma, Renal CellKidney NeoplasmsAdaptor Proteins, Signal TransducingBiomarkersBiomarkers, TumorHumansKidneyProteomeProteomicsAdaptor Proteins, Signal TransducingBiomarkersBiomarkers, TumorProteomeSOSTDC1 protein, humanimmunohistochemistrykidneymucinous tubular carcinomaproteomicspindle cell carcinoma

Identifiers

PMID35043389
PMCPMC9311136
OpenAlexW4206227407

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.