Evidence map›Paper›PMID 35059859›Full record

ArticleMedical oncology (Northwood, London, England)2022

Comparative expression analysis of dasatinib and ponatinib-regulated lncRNAs in chronic myeloid leukemia and their network analysis.

Cagla Kayabasi, Ayse Caner, Sunde Yilmaz Susluer, Tugce Balci Okcanoglu, Besra Ozmen Yelken, Aycan Asik, Zeynep Mutlu, Cansu Caliskan Kurt, Bakiye Goker Bagca, Cigir Biray Avci and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Medical oncology (Northwood, London, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Sustained antiviral response againstFrontiers in pharmacology · 2024
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Cagla KayabasiDepartment of Medical Biology, Faculty of Medicine, Ege University, 35100, Izmir, Turkey. kayabasicagla@gmail.com.ORCID http://orcid.org/0000-0002-6797-7655
Ayse CanerDepartment of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX, 301429, USA. acaner@mdanderson.org.ORCID http://orcid.org/0000-0003-3058-9971
Sunde Yilmaz SusluerDepartment of Medical Biology, Faculty of Medicine, Ege University, 35100, Izmir, Turkey.
Tugce Balci OkcanogluVocational School of Health Sciences, Near East University, 99138, Nicosia, Turkish Republic of Northern Cyprus.
Besra Ozmen YelkenDepartment of Medical Biology, Faculty of Medicine, Izmir Bakircay University, Izmir, Turkey.
Aycan AsikDepartment of Medical Biology, Faculty of Medicine, Ege University, 35100, Izmir, Turkey.
Zeynep MutluDepartment of Medical Biology, Faculty of Medicine, Ege University, 35100, Izmir, Turkey.
Cansu Caliskan KurtDepartment of Medical Biology, Faculty of Medicine, Ege University, 35100, Izmir, Turkey.
Bakiye Goker BagcaDepartment of Medical Biology, Faculty of Medicine, Aydın Adnan Menderes University, Aydın, Turkey.
Cigir Biray AvciDepartment of Medical Biology, Faculty of Medicine, Ege University, 35100, Izmir, Turkey.
Fahri SahinDivision of Hematology, Department of Internal Medicine, Faculty of Medicine, Ege University, 35100, Izmir, Turkey.
Guray SaydamDivision of Hematology, Department of Internal Medicine, Faculty of Medicine, Ege University, 35100, Izmir, Turkey.
Cumhur GunduzDepartment of Medical Biology, Faculty of Medicine, Ege University, 35100, Izmir, Turkey.
Ege University · TRAdnan Menderes University · TRIzmir University · TRNear East University · CYThe University of Texas MD Anderson Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

LncRNAs are associated with malignancies with their tumor suppressor/oncogenic properties. Although many studies are conducted related to the mechanism of action for dasatinib and ponatinib in chronic myeloid leukemia (CML), their comparative effects on lncRNA expressions are largely unknown. Hence, we aimed to define the lncRNAs involved in the treatment of CML with dasatinib and ponatinib. We measured the cytotoxicities of dasatinib/ponatinib with CCK-8 assay and identified differentially expressed lncRNAs (DEL) by qRT-PCR. We determined the principal functions of DELs by Ingenuity Pathway Analysis (IPA) and performed gene ontology (GO) analysis for apoptosis and anti-proliferation-related lncRNAs. Apoptotic and anti-proliferative activities of dasatinib/ponatinib were confirmed by flow-cytometry. In K562 cells, dasatinib/ponatinib re-regulated lncRNAs which were dysregulated in leukemia. DELs after treatment (forty with dasatinib, thirty-seven with ponatinib) were related to increased cell death; decreased cell viability, proliferation, tumor growth, invasion, migration. Dasatinib-mediated network was related to cancer, hematological disease while ponatinib-mediated network was associated with cancer, cell death/survival, cell-to-cell signaling/interaction. Both treatments predicted activation of IFNγ, IL1β, TNF as upstream regulators, specially this effect was higher in dasatinib. Comparison analysis showed that ponatinib was predicted more effective in cell death of tumor cell line than dasatinib. We confirmed that ponatinib was more potent than dasatinib to induce apoptosis and inhibit proliferation of CML cells, in consensus with IPA and GO analysis results. LncRNAs are specifically involved in anti-leukemic activities of dasatinib and ponatinib. Our findings will contribute to understanding signalization occurring in CML cells after standard treatments.

Indexed as

ApoptosisCell Line, TumorCell ProliferationCell SurvivalDasatinibHumansImidazolesK562 CellsLeukemia, Myelogenous, Chronic, BCR-ABL PositiveProtein Kinase InhibitorsPyridazinesRNA, Long NoncodingSignal TransductionDasatinibImidazolesponatinibProtein Kinase InhibitorsPyridazinesRNA, Long NoncodingCell deathCell proliferationChronic myeloid leukemiaIngenuity pathway analysisLong non-coding RNATyrosine kinase inhibitors

Identifiers

PMID35059859
OpenAlexW4206613547

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.