Evidence map›Paper›PMID 35072517›Full record

ArticleEnvironmental health perspectives2022

Temporal Modulation of Differential Alternative Splicing in HaCaT Human Keratinocyte Cell Line Chronically Exposed to Arsenic for up to 28 Wk.

Ana P Ferragut Cardoso, Mayukh Banerjee, Laila Al-Eryani, Mohammed Sayed, Daniel W Wilkey, Michael L Merchant, Juw W Park, J Christopher States

Open access · diamondAbstract read
In one paragraph

Article in Environmental health perspectives, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  6. Review
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  12. Article
  13. miR-186 induces tetraploidy in arsenic exposed human keratinocytes.Ecotoxicology and environmental safety · 2023
    Article
  14. Targeting alternative splicing in cancer immunotherapy.Frontiers in cell and developmental biology · 2023
    Review
  15. Epigenomic reprogramming in iAs-mediated carcinogenesis.Advances in pharmacology (San Diego, Calif.) · 2023
    Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Ana P Ferragut CardosoDepartment of Pharmacology and Toxicology, University of Louisville, Louisville, Kentucky, USA.ORCID 0000-0001-6689-7437
Mayukh BanerjeeDepartment of Pharmacology and Toxicology, University of Louisville, Louisville, Kentucky, USA.
Laila Al-EryaniDepartment of Pharmacology and Toxicology, University of Louisville, Louisville, Kentucky, USA.
Mohammed SayedComputer Science and Engineering, University of Louisville, Louisville, Kentucky, USA.
Daniel W WilkeyDivision of Nephrology & Hypertension, Department of Medicine, University of Louisville, Louisville, Kentucky, USA.
Michael L MerchantDepartment of Pharmacology and Toxicology, University of Louisville, Louisville, Kentucky, USA.
Juw W ParkComputer Science and Engineering, University of Louisville, Louisville, Kentucky, USA.
J Christopher StatesDepartment of Pharmacology and Toxicology, University of Louisville, Louisville, Kentucky, USA.ORCID 0000-0003-4717-4422
University of Louisville · US

Funding

WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
Role of oxidized linoleic acid metabolites in the pathogenesis of alcoholic liver diseaseP20GM113226 · NIGMS · UNIVERSITY OF LOUISVILLE · PI BARVE, SHIRISH S · 2016 to 2025
$24.1M
The Role of Nutrition in the Development/Progression of Alcohol-Induced Organ InjuryP50AA024337 · NIAAA · UNIVERSITY OF LOUISVILLE · PI Xiang Zhang · 2016 to 2026
$17.9M
University of Louisville Center for Integrative Environmental Health SciencesP30ES030283 · NIEHS · UNIVERSITY OF LOUISVILLE · PI Amanda Jo LeBlanc · 2020 to 2026
$10.0M
Mechanism for arsenic induced carcinogenesisR01ES027778 · NIEHS · UNIVERSITY OF LOUISVILLE · PI J CHRISTOPHER STATES · 2017 to 2026
$4.3M
Detecting and characterizing circular RNAs using high-throughput sequencing dataR15GM126446 · NIGMS · UNIVERSITY OF LOUISVILLE · PI PARK, JUW WON · 2017 to 2017
$462k
Alternative splicing in arsenical skin carcinogenesisR21ES030334 · NIEHS · UNIVERSITY OF LOUISVILLE · PI STATES, J CHRISTOPHER · 2020 to 2021
$429k
Differential miRNA expression & progression of arsenic induced skin cancersR21ES023627 · NIEHS · UNIVERSITY OF LOUISVILLE · PI STATES, J CHRISTOPHER · 2015 to 2016
$422k
NIEHS NIH HHS P30 ES030283NIEHS NIH HHS R01 ES027778NIEHS NIH HHS R21 ES023627NIEHS NIH HHS R21 ES030334NIGMS NIH HHS P20 GM103436NIGMS NIH HHS P20 GM113226NIGMS NIH HHS R15 GM126446
6 · The paper itself

Abstract

backgroundChronic arsenic exposure via drinking water is associated with an increased risk of developing cancer and noncancer chronic diseases. Pre-mRNAs are often subject to alternative splicing, generating mRNA isoforms encoding functionally distinct protein isoforms. The resulting imbalance in isoform species can result in pathogenic changes in critical signaling pathways. Alternative splicing as a mechanism of arsenic-induced toxicity and carcinogenicity is understudied.

objectiveThis study aimed to accurately profile differential alternative splicing events in human keratinocytes induced by chronic arsenic exposure that might play a role in carcinogenesis.

methodsIndependent quadruplicate cultures of immortalized human keratinocytes (HaCaT) were maintained continuously for 28 wk with 0 or

resultsAt least 600 differential alternative splicing events were detected at each time point tested, comprising all the five main types of alternative splicing and occurring in both open reading frames (ORFs) and untranslated regions (UTRs). Based on functional relevance DISCUSSION: These results using cultures of HaCaT cells suggest that arsenic exposure disrupted an alternative splice factor network and induced time-dependent genome-wide differential alternative splicing that likely contributed to the changing proteomic landscape in arsenic-induced carcinogenesis. However, significant challenges remain in corroborating alternative splicing data at the proteomic level. https://doi.org/10.1289/EHP9676.

Indexed as

ArsenicAlternative SplicingHaCaT CellsHumansKeratinocytesProteinsProteomicsArsenicProteinsXRRA1 protein, human

Identifiers

PMID35072517
PMCPMC8785870
OpenAlexW4207012487

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.