Evidence map›Paper›PMID 35082832›Full record

ArticleFrontiers in genetics2021

Comprehensive Genomic Discovery of Non-Coding Transcriptional Enhancers in the African Malaria Vector

Inge Holm, Luisa Nardini, Adrien Pain, Emmanuel Bischoff, Cameron E Anderson, Soumanaba Zongo, Wamdaogo M Guelbeogo, N'Fale Sagnon, Daryl M Gohl, Ronald J Nowling and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Inge HolmInstitut Pasteur, Université de Paris, CNRS UMR 2000, Unit of Insect Vector Genetics and Genomics, Department of Parasites and Insect Vectors, Paris, France.
Luisa NardiniInstitut Pasteur, Université de Paris, CNRS UMR 2000, Unit of Insect Vector Genetics and Genomics, Department of Parasites and Insect Vectors, Paris, France.
Adrien PainInstitut Pasteur, Université de Paris, CNRS UMR 2000, Unit of Insect Vector Genetics and Genomics, Department of Parasites and Insect Vectors, Paris, France.
Emmanuel BischoffInstitut Pasteur, Université de Paris, CNRS UMR 2000, Unit of Insect Vector Genetics and Genomics, Department of Parasites and Insect Vectors, Paris, France.
Cameron E AndersonDepartment of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, WI, United States.
Soumanaba ZongoCentre National de Recherche et de Formation sur le Paludisme (CNRFP), Ministry of Health, Ouagadougou, Burkina Faso.
Wamdaogo M GuelbeogoCentre National de Recherche et de Formation sur le Paludisme (CNRFP), Ministry of Health, Ouagadougou, Burkina Faso.
N'Fale SagnonCentre National de Recherche et de Formation sur le Paludisme (CNRFP), Ministry of Health, Ouagadougou, Burkina Faso.
Daryl M GohlUniversity of Minnesota Genomics Center, Minneapolis, MN, United States.
Ronald J NowlingDepartment of Electrical Engineering and Computer Science, Milwaukee School of Engineering (MSOE), Milwaukee, WI, United States.
Kenneth D VernickInstitut Pasteur, Université de Paris, CNRS UMR 2000, Unit of Insect Vector Genetics and Genomics, Department of Parasites and Insect Vectors, Paris, France.
Michelle M RiehleDepartment of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, WI, United States.
Centre National de Recherche et de Formation sur le Paludisme · BFInstitut Pasteur · FRMedical College of Wisconsin · USUniversité Paris Cité · FRCentre National de la Recherche Scientifique · FRMilwaukee School of Engineering · USUniversity of Minnesota · US

Funding

Noncoding DNA regulatory elements and Anopheles vector biologyR01AI145999 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI RIEHLE, MICHELLE M · 2020 to 2024
$1.8M
Gene enhancer mapping technology in AnophelesR21AI121587 · NIAID · UNIVERSITY OF MINNESOTA · PI RIEHLE, MICHELLE M · 2016 to 2017
$421k
NIAID NIH HHS R01 AI145999NIAID NIH HHS R21 AI121587
6 · The paper itself

Abstract

Almost all regulation of gene expression in eukaryotic genomes is mediated by the action of distant non-coding transcriptional enhancers upon proximal gene promoters. Enhancer locations cannot be accurately predicted bioinformatically because of the absence of a defined sequence code, and thus functional assays are required for their direct detection. Here we used a massively parallel reporter assay, Self-Transcribing Active Regulatory Region sequencing (STARR-seq), to generate the first comprehensive genome-wide map of enhancers in

Indexed as

anophelesenhancermosquitonon-codingregulatory elementSTARR-seq

Identifiers

PMID35082832
PMCPMC8784733
OpenAlexW4205739144

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.