Evidence map›Paper›PMID 35119145›Full record

ArticleCell proliferation2022

Analysis of chromatin accessibility in p53 deficient spermatogonial stem cells for high frequency transformation into pluripotent state.

Sitong Liu, Rui Wei, Hongyang Liu, Ruiqi Liu, Pengxiao Li, Xiaoyu Zhang, Wei Wei, Xiaodong Zhao, Xiaomeng Li, Yang Yang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell proliferation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Sitong LiuCollege of Life Sciences, Jilin University, Changchun, China.
Rui WeiGermline Stem Cells and Microenvironment Lab, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China.
Hongyang LiuGermline Stem Cells and Microenvironment Lab, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China.
Ruiqi LiuKey Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Bio-medicine, Shanghai Jiao Tong University, Shanghai, China.
Pengxiao LiKey Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Bio-medicine, Shanghai Jiao Tong University, Shanghai, China.
Xiaoyu ZhangGermline Stem Cells and Microenvironment Lab, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China.
Wei WeiThe Key Laboratory of Molecular Epigenetics of MOE, Institute of Genetics and Cytology, Northeast Normal University, Changchun, China.
Xiaodong ZhaoKey Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Bio-medicine, Shanghai Jiao Tong University, Shanghai, China.
Xiaomeng LiThe Key Laboratory of Molecular Epigenetics of MOE, Institute of Genetics and Cytology, Northeast Normal University, Changchun, China.
Yang YangState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing, China.
Xueqi FuCollege of Life Sciences, Jilin University, Changchun, China.
Kang ZouGermline Stem Cells and Microenvironment Lab, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China.ORCID https://orcid.org/0000-0002-1253-1816
Nanjing Agricultural University · CNShanghai Jiao Tong University · CNJilin University · CNNortheast Normal University · CNNanjing Medical University · CN

Funding

Ministry of Science and Technology of the People's Republic of China 2021YFE0108000National Natural Science Foundation of China 31870758The Foundation of State Key Laboratory for Reproductive Medicine, Nanjing Medical University SKLRM-K202011
6 · The paper itself

Abstract

objectivesSpermatogonial stem cells (SSCs), the germline stem cells (GSCs) committed to spermatogenesis in niche, can transform into pluripotent state in long-term culture without introduction of exogenous factors, typically in p53 deficiency condition. As the guardian for genomic stability, p53 is associated with epigenetic alterations during SSCs transformation. However, the mechanism is still unknown, since complicated roles of p53 baffle our understanding of the regulating process. MATERIALS AND

methodsThe chromatin accessibility and differentially expressed genes (DEGs) were analysed in p53

resultsSeveral transcription factors (TFs), such as CTCF, SMAD3 and SOX2, were predicted as important factors mediating the transformation. Molecular evidence suggested that SMAD3 efficiently promoted pluripotency-associated gene expression both in fresh and long-term cultured SSCs. However, p53 knockout (KO) is insufficient to induce SMAD3 expression in SSCs.

conclusionsThese observations indicate that SMAD3 is a key factor for SSCs transformation, and an unknown event is required to activate SMAD3 as the prerequisite for SSCs reprogramming, which may occur in the long-term culture of SSCs. This study demonstrates the connection of p53 and pluripotency-associated factors, providing new insight for understanding the mechanisms of SSCs reprogramming and germline tumorigenesis.

Indexed as

Adult Germline Stem CellsAnimalsCell DifferentiationCellular ReprogrammingChromatinMaleMice, TransgenicPluripotent Stem CellsSpermatogenesisSpermatogoniaTranscription FactorsTumor Suppressor Protein p53ChromatinTranscription FactorsTumor Suppressor Protein p53ATAC-seqchromatin accessibilityembryonic stem-likegermlinetranscription factor

Identifiers

PMID35119145
PMCPMC8891552
OpenAlexW4210729835

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.