Evidence map›Paper›PMID 35134084›Full record

ArticlePLoS pathogens2022

A SARS-CoV-2 variant elicits an antibody response with a shifted immunodominance hierarchy.

Allison J Greaney, Tyler N Starr, Rachel T Eguia, Andrea N Loes, Khadija Khan, Farina Karim, Sandile Cele, John E Bowen, Jennifer K Logue, Davide Corti and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 1 pooled it
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 1 synthesis or guideline pooled it, 78 citations in OpenAlex.

  1. Pooled it
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  11. Cross-reactive sarbecovirus antibodies induced by mosaic RBD nanoparticles.Proceedings of the National Academy of Sciences of the United States of America · 2025
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Allison J GreaneyBasic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0001-7202-3349
Tyler N StarrBasic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0001-6713-6904
Rachel T EguiaBasic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Andrea N LoesBasic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0002-8659-0149
Khadija KhanAfrica Health Research Institute, Durban, South Africa.ORCID 0000-0001-7565-7400
Farina KarimAfrica Health Research Institute, Durban, South Africa.
Sandile CeleAfrica Health Research Institute, Durban, South Africa.
John E BowenDepartment of Biochemistry, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0003-3590-9727
Jennifer K LogueDivision of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-7889-8960
Davide CortiHumabs BioMed SA, a subsidiary of Vir Biotechnology, Bellinzona, Switzerland.ORCID 0000-0002-5797-1364
David VeeslerHoward Hughes Medical Institute, Chevy Chase, Maryland, United States of America.
Helen Y ChuDivision of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0001-8502-9600
Alex SigalAfrica Health Research Institute, Durban, South Africa.ORCID 0000-0001-8571-2004
Jesse D BloomBasic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0003-1267-3408
Africa Health Research Institute · ZAHoward Hughes Medical Institute · USUniversity of Washington · USFred Hutch Cancer Center · USVir Biotechnology (Switzerland) · CH

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00015 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HENSLEY, SCOTT · 2021 to 2025
$50.7M
Unraveling the bat humoral immune response against zoonotic viruses to guide the design of next-generation therapeuticsDP1AI158186 · NIAID · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2020 to 2024
$5.4M
Viral Pathogenesis Training ProgramT32AI083203 · NIAID · UNIVERSITY OF WASHINGTON · PI BLOOM, JESSE D, LAGUNOFF, MICHAEL · 2009 to 2023
$2.7M
Prospectively characterizing the functional and antigenic effects of mutations to viral entry proteinsR01AI141707 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BLOOM, JESSE D · 2018 to 2022
$2.1M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
Howard Hughes Medical InstituteNIAID NIH HHS 75N93021C00015NIAID NIH HHS DP1 AI158186NIAID NIH HHS HHSN272201400006CNIAID NIH HHS HHSN272201700059CNIAID NIH HHS R01 AI141707NIAID NIH HHS T32 AI083203NIH HHS S10 OD028685Wellcome Trust
6 · The paper itself

Abstract

Many SARS-CoV-2 variants have mutations at key sites targeted by antibodies. However, it is unknown if antibodies elicited by infection with these variants target the same or different regions of the viral spike as antibodies elicited by earlier viral isolates. Here we compare the specificities of polyclonal antibodies produced by humans infected with early 2020 isolates versus the B.1.351 variant of concern (also known as Beta or 20H/501Y.V2), which contains mutations in multiple key spike epitopes. The serum neutralizing activity of antibodies elicited by infection with both early 2020 viruses and B.1.351 is heavily focused on the spike receptor-binding domain (RBD). However, within the RBD, B.1.351-elicited antibodies are more focused on the "class 3" epitope spanning sites 443 to 452, and neutralization by these antibodies is notably less affected by mutations at residue 484. Our results show that SARS-CoV-2 variants can elicit polyclonal antibodies with different immunodominance hierarchies.

Indexed as

Antibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralAntibody FormationCOVID-19COVID-19 Drug TreatmentEpitopesHumansImmunization, PassiveNeutralization TestsSARS-CoV-2Spike Glycoprotein, CoronavirusAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralEpitopesSpike Glycoprotein, Coronavirus

Identifiers

PMID35134084
PMCPMC8856557
OpenAlexW4220761771

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.