Evidence map›Paper›PMID 35136556›Full record

ArticleEcology and evolution2022

Loss of the IR region in conifer plastomes: Changes in the selection pressure and substitution rate of protein-coding genes.

Jingyao Ping, Jing Hao, Jinye Li, Yiqing Yang, Yingjuan Su, Ting Wang

Abstract read
In one paragraph

Article in Ecology and evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Chloroplast Genomes Evolution and Phylogenetic Relationships ofInternational journal of molecular sciences · 2024
    Article
  7. Novel molecular markers forFrontiers in genetics · 2023
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jingyao PingCollege of Life Sciences South China Agricultural University Guangzhou China.ORCID https://orcid.org/0000-0003-2579-2561
Jing HaoCollege of Life Sciences South China Agricultural University Guangzhou China.
Jinye LiCollege of Life Sciences South China Agricultural University Guangzhou China.
Yiqing YangCollege of Life Science and Technology Central South University of Forestry and Technology Changsha China.
Yingjuan SuSchool of Life Sciences Sun Yat-sen University Guangzhou China.ORCID https://orcid.org/0000-0001-6110-2869
Ting WangCollege of Life Sciences South China Agricultural University Guangzhou China.ORCID https://orcid.org/0000-0001-5025-4584

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plastid genomes (plastomes) have a quadripartite structure, but some species have drastically reduced or lost inverted repeat (IR) regions. IR regions are important for genome stability and the evolution rate. In the evolutionary process of gymnosperms, the typical IRs of conifers were lost, possibly affecting the evolutionary rate and selection pressure of genomic protein-coding genes. In this study, we selected 78 gymnosperm species (51 genera, 13 families) for evolutionary analysis. The selection pressure analysis results showed that negative selection effects were detected in all 50 common genes. Among them, six genes in conifers had higher

Indexed as

conifergymnosperminverted repeat regionrate heterogeneityselection pressure

Identifiers

PMID35136556
PMCPMC8809450

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.