Evidence map›Paper›PMID 35144696›Full record

ArticleJournal of animal science and biotechnology2022

A Capra hircus chromosome 19 locus linked to milk production influences mammary conformation.

Andrew Jiang, Alex Ankersmit-Udy, Sally-Anne Turner, Megan Scholtens, Mathew D Littlejohn, Nicolas Lopez-Villalobos, Colin G Proser, Russell G Snell, Klaus Lehnert

Open access · goldAbstract read
In one paragraph

Article in Journal of animal science and biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Andrew JiangApplied Translational Genetics Group, School of Biological Sciences, The University of Auckland, Auckland, New Zealand.
Alex Ankersmit-UdyApplied Translational Genetics Group, School of Biological Sciences, The University of Auckland, Auckland, New Zealand.
Sally-Anne TurnerDairy Goat Co-operative, Hamilton, New Zealand.
Megan ScholtensCawthron Institute, Nelson, New Zealand.
Mathew D LittlejohnAL Rae Centre of Genetics and Breeding, Massey University, Hamilton, New Zealand.
Nicolas Lopez-VillalobosDairy Cattle Breeding and Genetics, School of Agriculture & Environment, Massey University, Hamilton, New Zealand.
Colin G ProserDairy Goat Co-operative, Hamilton, New Zealand.
Russell G SnellApplied Translational Genetics Group, School of Biological Sciences, The University of Auckland, Auckland, New Zealand. r.snell@auckland.ac.nz.ORCID http://orcid.org/0000-0002-8166-4014
Klaus LehnertApplied Translational Genetics Group, School of Biological Sciences, The University of Auckland, Auckland, New Zealand.
University of Auckland · NZDairyNZ · NZMassey University · NZCawthron Institute · NZ

Funding

New Zealand Government MBIEThe Dairy Goat Cooperative CAPRINZThe New Zealand Government MPI SFF Fund
6 · The paper itself

Abstract

backgroundEconomically important milk production traits including milk volume, milk fat and protein yield vary considerably across dairy goats in New Zealand. A significant portion of the variation is attributable to genetic variation. Discovery of genetic markers linked to milk production traits can be utilised to drive selection of high-performance animals. A previously reported genome wide association study across dairy goats in New Zealand identified a quantitative trait locus (QTL) located on chromosome 19. The most significantly associated single nucleotide polymorphism (SNP) marker for this locus is located at position 26,610,610 (SNP marker rs268292132). This locus is associated with multiple milk production traits including fat, protein and volume. The predicted effect of selection for the beneficial haplotype would result in an average production increase of 2.2 kg fat, 1.9 kg protein and 73.6 kg milk yield. An outstanding question was whether selection for the beneficial allele would co-select for any negative pleiotropic effects. An adverse relationship between milk production and udder health traits has been reported at this locus. Therefore, a genome wide association study was undertaken looking for loci associated with udder traits.

resultsThe QTL and production associated marker rs268292132 was identified in this study to also be associated with several goat udder traits including udder depth (UD), fore udder attachment (FUA) and rear udder attachment (RUA). Our study replicates the negative relationship between production and udder traits with the high production allele at position 19:26,610,610 (SNP marker rs268292132) associated with an adverse change in UD, FUA and RUA.

conclusionsOur study has confirmed the negative relationship between udder traits and production traits in the NZ goat population. We have found that the frequency of the high production allele is relatively high in the NZ goat population, indicating that its effect on udder conformation is not significantly detrimental on animal health. It will however be important to monitor udder conformation as the chromosome 19 locus is progressively implemented for marker assisted selection. It will also be of interest to determine if the gene underlying the production QTL has a direct effect on mammary gland morphology or whether the changes observed are a consequence of the increased milk volume.

Indexed as

Capra hircusMilk productionPleiotropic effectsQuantitaive trait lociUdder conformation

Identifiers

PMID35144696
PMCPMC8832686
OpenAlexW4225966404

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.