Evidence map›Paper›PMID 35145304›Full record

ArticleNature genetics2022

CRISPR and biochemical screens identify MAZ as a cofactor in CTCF-mediated insulation at Hox clusters.

Havva Ortabozkoyun, Pin-Yao Huang, Hyunwoo Cho, Varun Narendra, Gary LeRoy, Edgar Gonzalez-Buendia, Jane A Skok, Aristotelis Tsirigos, Esteban O Mazzoni, Danny Reinberg

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 1 pooled it
8.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Re-establishment of TAD boundary organization during DNA replication.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. PDS5A and TOP2B cooperate for chromatin recruitment via CTCF.bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. High-throughputbioRxiv : the preprint server for biology · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Havva OrtabozkoyunHoward Hughes Medical Institute, NYU Grossman School of Medicine, New York, NY, USA.
Pin-Yao HuangHoward Hughes Medical Institute, NYU Grossman School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0003-3382-9125
Hyunwoo ChoDepartment of Pathology, NYU Grossman School of Medicine, New York, NY, USA.
Varun NarendraDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Gary LeRoyHoward Hughes Medical Institute, NYU Grossman School of Medicine, New York, NY, USA.
Edgar Gonzalez-BuendiaHoward Hughes Medical Institute, NYU Grossman School of Medicine, New York, NY, USA.
Jane A SkokDepartment of Pathology, NYU Grossman School of Medicine, New York, NY, USA.
Aristotelis TsirigosDepartment of Pathology, NYU Grossman School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-7512-8477
Esteban O MazzoniDepartment of Biology, New York University, New York, NY, USA.ORCID http://orcid.org/0000-0001-8994-681X
Danny ReinbergHoward Hughes Medical Institute, NYU Grossman School of Medicine, New York, NY, USA. Danny.Reinberg@nyulangone.org.ORCID http://orcid.org/0000-0003-4288-2016
Howard Hughes Medical Institute · USNew York University · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 1985 to 2026
$83.1M
The impact of changes in chromatin architecture on cancer phenotypes and tumor progressionP01CA229086 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Iannis Aifantis · 2019 to 2026
$17.0M
Nuclear organization and its role in gene regulationR35GM122515 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Jane Amanda Skok · 2017 to 2026
$7.1M
Understanding CTCF Boundaries Controlling Hox Gene ExpressionR01NS100897 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Esteban Orlando Mazzoni, DANNY REINBERG · 2018 to 2026
$4.1M
Targeting Epigenetic Heterogeneity in Pediatric T cell leukemia: Epi-Clones as Drivers of ChemoresistanceR01CA252239 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Aristotelis Tsirigos · 2021 to 2026
$3.7M
Remodeling of 3D chromatin in B cell acute leukemia and its impact on clinical outcomeR01CA260028 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARROLL, WILLIAM L., LIONNET, TIMOTHEE · 2021 to 2025
$2.2M
The biochemical, topological and functional impact of cancer associated Ctcf mutations and their contribution to cancerR01CA229235 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SKOK, JANE AMANDA · 2018 to 2018
$482k
Identification of factors that affect the insulator function of CTCFF31HD090892 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ORTABOZKOYUN KARA, HAVVA · 2017 to 2019
$118k
Howard Hughes Medical InstituteNCI NIH HHS P01 CA229086NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA229235NCI NIH HHS R01 CA252239NICHD NIH HHS F31 HD090892NIGMS NIH HHS R35 GM122515NINDS NIH HHS R01 NS100897
6 · The paper itself

Abstract

CCCTC-binding factor (CTCF) is critical to three-dimensional genome organization. Upon differentiation, CTCF insulates active and repressed genes within Hox gene clusters. We conducted a genome-wide CRISPR knockout (KO) screen to identify genes required for CTCF-boundary activity at the HoxA cluster, complemented by biochemical approaches. Among the candidates, we identified Myc-associated zinc-finger protein (MAZ) as a cofactor in CTCF insulation. MAZ colocalizes with CTCF at chromatin borders and, similar to CTCF, interacts with the cohesin subunit RAD21. MAZ KO disrupts gene expression and local contacts within topologically associating domains. Similar to CTCF motif deletions, MAZ motif deletions lead to derepression of posterior Hox genes immediately after CTCF boundaries upon differentiation, giving rise to homeotic transformations in mouse. Thus, MAZ is a factor contributing to appropriate insulation, gene expression and genomic architecture during development.

Indexed as

Genes, HomeoboxAnimalsCCCTC-Binding FactorCell Cycle ProteinsCell DifferentiationCell LineChromatinCRISPR-Cas SystemsDNA-Binding ProteinsEmbryonic Stem CellsGene EditingGene ExpressionGene Expression Regulation, DevelopmentalHomeodomain ProteinsMiceTranscription FactorsCCCTC-Binding FactorCell Cycle ProteinsChromatinc-MYC-associated zinc finger proteinCtcf protein, mouseDNA-Binding ProteinsHomeodomain ProteinsHoxA proteinRad21 protein, mouseTranscription Factors

Identifiers

PMID35145304
PMCPMC8837555
OpenAlexW4211192717

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.