Evidence map›Paper›PMID 35164133›Full record

ArticleMolecules (Basel, Switzerland)2022

Preprocessing Strategies for Sparse Infrared Spectroscopy: A Case Study on Cartilage Diagnostics.

Valeria Tafintseva, Tiril Aurora Lintvedt, Johanne Heitmann Solheim, Boris Zimmermann, Hafeez Ur Rehman, Vesa Virtanen, Rubina Shaikh, Ervin Nippolainen, Isaac Afara, Simo Saarakkala and 5 more

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Valeria TafintsevaFaculty of Science and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway.ORCID 0000-0001-6015-0893
Tiril Aurora LintvedtFaculty of Science and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway.
Johanne Heitmann SolheimFaculty of Science and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway.
Boris ZimmermannFaculty of Science and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway.ORCID 0000-0001-5046-520X
Hafeez Ur RehmanFaculty of Science and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway.ORCID 0000-0002-7400-4026
Vesa VirtanenResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, 90220 Oulu, Finland.ORCID 0000-0002-5797-5365
Rubina ShaikhDepartment of Applied Physics, University of Eastern Finland, 70211 Kuopio, Finland.
Ervin NippolainenDepartment of Applied Physics, University of Eastern Finland, 70211 Kuopio, Finland.
Isaac AfaraDepartment of Applied Physics, University of Eastern Finland, 70211 Kuopio, Finland.
Simo SaarakkalaResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, 90220 Oulu, Finland.ORCID 0000-0003-2850-5484
Lassi RieppoResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, 90220 Oulu, Finland.
Patrick KrebsInstitute of Analytical and Bioanalytical Chemistry, Ulm University, 89081 Ulm, Germany.
Polina FominaInstitute of Analytical and Bioanalytical Chemistry, Ulm University, 89081 Ulm, Germany.ORCID 0000-0002-8315-7948
Boris MizaikoffInstitute of Analytical and Bioanalytical Chemistry, Ulm University, 89081 Ulm, Germany.
Achim KohlerFaculty of Science and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway.
Norwegian University of Life Sciences · NOUniversität Ulm · DEUniversity of Eastern Finland · FIUniversity of Oulu · FINofima · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aim of the study was to optimize preprocessing of sparse infrared spectral data. The sparse data were obtained by reducing broadband Fourier transform infrared attenuated total reflectance spectra of bovine and human cartilage, as well as of simulated spectral data, comprising several thousand spectral variables into datasets comprising only seven spectral variables. Different preprocessing approaches were compared, including simple baseline correction and normalization procedures, and model-based preprocessing, such as multiplicative signal correction (MSC). The optimal preprocessing was selected based on the quality of classification models established by partial least squares discriminant analysis for discriminating healthy and damaged cartilage samples. The best results for the sparse data were obtained by preprocessing using a baseline offset correction at 1800 cm

Indexed as

Signal Processing, Computer-AssistedAnimalsCartilageCattleFemaleHumansMaleSpectroscopy, Fourier Transform Infraredmultiplicative signal correctionpreprocessingquantum cascade laserssparse spectra

Identifiers

PMID35164133
PMCPMC8839829
OpenAlexW4210563282

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.