Evidence map›Paper›PMID 35173144›Full record

ArticleNature communications2022

An efficient urine peptidomics workflow identifies chemically defined dietary gluten peptides from patients with celiac disease.

Brad A Palanski, Nielson Weng, Lichao Zhang, Andrew J Hilmer, Lalla A Fall, Kavya Swaminathan, Bana Jabri, Carolina Sousa, Nielsen Q Fernandez-Becker, Chaitan Khosla and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. New therapies in celiac disease.Current opinion in gastroenterology · 2025
    Review
  8. Review
  9. Is the microbiome important in celiac disease?Journal of the Canadian Association of Gastroenterology · 2025
    Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Current Challenges and Future Directions in Peptidomics.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  17. Article
  18. Article
  19. Celiac disease: mechanisms and emerging therapeutics.Trends in pharmacological sciences · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Brad A Palanski *Department of Chemistry, Stanford University, Stanford, CA, USA.
Nielson Weng *Department of Chemistry, Stanford University, Stanford, CA, USA.
Lichao ZhangChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-1811-7568
Andrew J HilmerDepartment of Chemistry, Stanford University, Stanford, CA, USA.
Lalla A FallStanford ChEM-H, Stanford University, Stanford, CA, USA.
Kavya SwaminathanDivision of Blood and Bone Marrow Transplantation, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-7715-5375
Bana JabriDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Carolina SousaFacultad de Farmacia, Departamento de Microbiología y Parasitología, Universidad de Sevilla, Sevilla, Spain.ORCID http://orcid.org/0000-0002-9235-9496
Nielsen Q Fernandez-BeckerDivision of Gastroenterology and Hepatology, Department of Medicine, Stanford University, Stanford, CA, USA.
Chaitan KhoslaDepartment of Chemistry, Stanford University, Stanford, CA, USA. khosla@stanford.edu.
Joshua E EliasChan Zuckerberg Biohub, San Francisco, CA, USA. josh.elias@czbiohub.org.ORCID http://orcid.org/0000-0002-8063-3259
Stanford University · USChan Zuckerberg Initiative (United States) · USBrigham and Women's Hospital · USStanford Medicine · USUniversidad de Sevilla · ESUniversity of Chicago · US

Funding

Role of Transglutaminase 2 in Celiac SprueR01DK063158 · NIDDK · STANFORD UNIVERSITY · PI CHAITAN KHOSLA · 2003 to 2026
$11.2M
NIDDK NIH HHS R01 DK063158
6 · The paper itself

Abstract

Celiac disease (CeD) is an autoimmune disorder induced by consuming gluten proteins from wheat, barley, and rye. Glutens resist gastrointestinal proteolysis, resulting in peptides that elicit inflammation in patients with CeD. Despite well-established connections between glutens and CeD, chemically defined, bioavailable peptides produced from dietary proteins have never been identified from humans in an unbiased manner. This is largely attributable to technical challenges, impeding our knowledge of potentially diverse peptide species that encounter the immune system. Here, we develop a liquid chromatographic-mass spectrometric workflow for untargeted sequence analysis of the urinary peptidome. We detect over 600 distinct dietary peptides, of which ~35% have a CeD-relevant T cell epitope and ~5% are known to stimulate innate immune responses. Remarkably, gluten peptides from patients with CeD qualitatively and quantitatively differ from controls. Our results provide a new foundation for understanding gluten immunogenicity, improving CeD management, and characterizing the dietary and urinary peptidomes.

Indexed as

Amino Acid SequenceCeliac DiseaseChromatography, LiquidEpitopes, T-LymphocyteGlutensHordeumHumansMass SpectrometryProteomeSecaleT-LymphocytesTriticumUrineEpitopes, T-LymphocyteGlutensProteome

Identifiers

PMID35173144
PMCPMC8850430
OpenAlexW4221072522

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.