Evidence map›Paper›PMID 35216023›Full record

ArticleViruses2022

Transkingdom Analysis of the Female Reproductive Tract Reveals Bacteriophages form Communities.

Ferralita S Madere, Michael Sohn, Angelina K Winbush, Breóna Barr, Alex Grier, Cal Palumbo, James Java, Tracy Meiring, Anna-Lise Williamson, Linda-Gail Bekker and 2 more

Abstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Bacteriophage-mediated reduction of uropathogenicbioRxiv : the preprint server for biology · 2025
    Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Female reproductive tract-organ axes.Frontiers in immunology · 2023
    Review
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ferralita S MadereDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY 14642, USA.ORCID 0000-0001-7710-3444
Michael SohnDepartment of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY 14642, USA.
Angelina K WinbushDivision of Internal Medicine, University of Rochester School of Medicine & Dentistry, Rochester, NY 14642, USA.
Breóna BarrDepartment of Rural Family Medicine, West Virginia University, Morgantown, WV 25425, USA.
Alex GrierUR Genomics Research Center, University of Rochester Medical Center, Rochester, NY 14642, USA.
Cal PalumboUR Genomics Research Center, University of Rochester Medical Center, Rochester, NY 14642, USA.ORCID 0000-0003-3468-3754
James JavaUR Genomics Research Center, University of Rochester Medical Center, Rochester, NY 14642, USA.
Tracy MeiringInstitute of Infectious Diseases & Molecular Medicine and Division of Medical Virology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa.
Anna-Lise WilliamsonInstitute of Infectious Diseases & Molecular Medicine and Division of Medical Virology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa.ORCID 0000-0002-5467-1200
Linda-Gail BekkerDesmond Tutu HIV Centre, Institute of Infectious Diseases & Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa.
David H AdlerDepartment of Emergency Medicine, University of Rochester Medical Center, Rochester, NY 14642, USA.ORCID 0000-0002-8797-1621
Cynthia L MonacoDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY 14642, USA.ORCID 0000-0003-3093-5563

Funding

Virology/Immunology CoreP30AI078498 · NIAID · UNIVERSITY OF ROCHESTER · PI DEWHURST, STEPHEN · 2008 to 2018
$14.6M
Training in HIV Replication and PathogenesisT32AI049815 · NIAID · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2001 to 2020
$3.5M
NIAID NIH HHS P30 AI078498NIAID NIH HHS T32 AI049815
6 · The paper itself

Abstract

The female reproductive tract (FRT) microbiome plays a vital role in maintaining vaginal health. Viruses are key regulators of other microbial ecosystems, but little is known about how the FRT viruses (virome), particularly bacteriophages that comprise the phageome, impact FRT health and dysbiosis. We hypothesize that bacterial vaginosis (BV) is associated with altered FRT phageome diversity, transkingdom interplay, and bacteriophage discriminate taxa. Here, we conducted a retrospective, longitudinal analysis of vaginal swabs collected from 54 BV-positive and 46 BV-negative South African women. Bacteriome analysis revealed samples clustered into five distinct bacterial community groups (CGs), and further, bacterial alpha diversity was significantly associated with BV. Virome analysis on a subset of baseline samples showed FRT bacteriophages clustering into novel viral state types (VSTs), a viral community clustering system based on virome composition and abundance. Distinct BV bacteriophage signatures included increased alpha diversity along with discriminant

Indexed as

AdolescentBacteriophagesDysbiosisFemaleHIV InfectionsHumansMicrobiotaRetrospective StudiesSouth AfricaVaginaVaginosis, BacterialViromeYoung Adultbacterial vaginosisbacteriophagefemale reproductive tractHIVmicrobiometranskingdom associationsvirome

Identifiers

PMID35216023
PMCPMC8878565

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.