Evidence map›Paper›PMID 35235182›Full record

ArticleCell stress & chaperones2021

Cluster analyses of the TCGA and a TMA dataset using the coexpression of HSP27 and CRYAB improves alignment with clinical-pathological parameters of breast cancer and suggests different epichaperome influences for each sHSP.

Philip R Quinlan, Grazziela Figeuredo, Nigel Mongan, Lee B Jordan, Susan E Bray, Roman Sreseli, Alison Ashfield, Jurgen Mitsch, Paul van den Ijssel, Alastair M Thompson and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Cell stress & chaperones, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Philip R QuinlanDigital Research Service, University of Nottingham, Nottingham, NG8 1BB, UK.
Grazziela FigeuredoDigital Research Service, University of Nottingham, Nottingham, NG8 1BB, UK.
Nigel MonganFaculty of Medicine and Health Sciences, Biodiscovery Institute University Park, Nottingham, NG7 2RD, UK.
Lee B JordanDundee Cancer Centre, Ninewells Hospital and Medical School, Dundee, DD1 9SY, UK.
Susan E BrayDundee Cancer Centre, Ninewells Hospital and Medical School, Dundee, DD1 9SY, UK.
Roman SreseliDundee Cancer Centre, Ninewells Hospital and Medical School, Dundee, DD1 9SY, UK.
Alison AshfieldDundee Cancer Centre, Ninewells Hospital and Medical School, Dundee, DD1 9SY, UK.
Jurgen MitschDigital Research Service, University of Nottingham, Nottingham, NG8 1BB, UK.
Paul van den IjsselFaculty of Medicine and Health Sciences, Biodiscovery Institute University Park, Nottingham, NG7 2RD, UK.
Alastair M ThompsonDundee Cancer Centre, Ninewells Hospital and Medical School, Dundee, DD1 9SY, UK. Alastair.Thompson@bcm.edu.
Roy A QuinlanDepartment of Biosciences, The University of Durham, Upper Mountjoy Science Site South Road, Durham, DH1 3LE, UK. r.a.quinlan@durham.ac.uk.
Ninewells Hospital · GBUniversity of Nottingham · GBDurham University · GB

Funding

Wellcome TrustWellcome Trust 59291
6 · The paper itself

Abstract

Our cluster analysis of the Cancer Genome Atlas for co-expression of HSP27 and CRYAB in breast cancer patients identified three patient groups based on their expression level combination (high HSP27 + low CRYAB; low HSP27 + high CRYAB; similar HSP27 + CRYAB). Our analyses also suggest that there is a statistically significant inverse relationship between HSP27 and CRYAB and known clinicopathological markers in breast cancer. Screening an unbiased 248 breast cancer patient tissue microarray (TMA) for the protein expression of HSP27 and phosphorylated HSP27 (HSP27-82pS) with CRYAB also identified three patient groups based on HSP27 and CRYAB expression levels. TMA24 also had recorded clinical-pathological parameters, such as ER and PR receptor status, patient survival, and TP53 mutation status. High HSP27 protein levels were significant with ER and PR expression. HSP27-82pS associated with the best patient survival (Log Rank test). High CRYAB expression in combination with wild-type TP53 was significant for patient survival, but a different patient outcome was observed when mutant TP53 was combined with high CRYAB expression. Our data suggest that HSP27 and CRYAB have different epichaperome influences in breast cancer, but more importantly evidence the value of a cluster analysis that considers their coexpression. Our approach can deliver convergence for archival datasets as well as those from recent treatment and patient cohorts and can align HSP27 and CRYAB expression to important clinical-pathological features of breast cancer.

Indexed as

Breast NeoplasmsHeat-Shock Proteins, Smallalpha-Crystallin B ChainCluster AnalysisFemaleHeat-Shock ProteinsHSP27 Heat-Shock ProteinsHumansMolecular Chaperonesalpha-Crystallin B ChainCRYAB protein, humanHeat-Shock ProteinsHeat-Shock Proteins, SmallHSP27 Heat-Shock ProteinsHSPB1 protein, humanMolecular ChaperonesAlphab-crystallinBreast cancerCancer Genome AtlasCluster analysisCryABEpichaperomeEstrogen receptor (ER)HSP27HSPB1HSPB5Monoclonal antibody specific to phosphorylated Serine 82 in HSP27Patient survivalProgesterone receptor (PR)Small heat shock proteinTP53

Identifiers

PMID35235182
PMCPMC8943080
OpenAlexW4214872743

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.