Evidence map›Paper›PMID 35263815›Full record

ArticleJournal of thrombosis and haemostasis : JTH2022

Thrombotic risk determined by rare and common SERPINA1 variants in a population-based cohort study.

Eric Manderstedt, Christer Halldén, Christina Lind-Halldén, Johan Elf, Peter J Svensson, Gunnar Engström, Olle Melander, Aris Baras, Luca A Lotta, Bengt Zöller and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of thrombosis and haemostasis : JTH, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Thrombotic risk determined byResearch and practice in thrombosis and haemostasis · 2025
    Article
  5. Recommendations for the diagnosis and treatment of alpha-1 antitrypsin deficiency.Jornal brasileiro de pneumologia : publicacao oficial da Sociedade Brasileira de Pneumologia e Tisilogia · 2024
    Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Eric ManderstedtDepartment of Environmental Science and Bioscience, Kristianstad University, Kristianstad, Sweden.ORCID 0000-0002-8984-9697
Christer HalldénDepartment of Environmental Science and Bioscience, Kristianstad University, Kristianstad, Sweden.
Christina Lind-HalldénDepartment of Environmental Science and Bioscience, Kristianstad University, Kristianstad, Sweden.
Johan ElfDepartment of Clinical Sciences, Skåne University Hospital, Lund University, Malmö, Sweden.
Peter J SvenssonDepartment of Clinical Sciences, Skåne University Hospital, Lund University, Malmö, Sweden.
Gunnar EngströmDepartment of Clinical Sciences, Skåne University Hospital, Lund University, Malmö, Sweden.
Olle MelanderDepartment of Clinical Sciences, Skåne University Hospital, Lund University, Malmö, Sweden.
Aris BarasRegeneron Genetics Center, Tarrytown, New York, USA.
Luca A LottaRegeneron Genetics Center, Tarrytown, New York, USA.
Bengt ZöllerCenter for Primary Health Care Research, Lund University and Region Skåne, Malmö, Sweden.ORCID 0000-0002-8250-5613
Regeneron Genetics CenterRegeneron Genetics Center, Tarrytown, New York, USA.
Lund University · SEKristianstad University · SERegeneron (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSevere alpha-1-antitrypsin deficiency (AATD), phenotype PiZZ, was associated with venous thromboembolism (VTE) in a case-control study.

objectivesThis study aimed to determine the genetic variation in the SERPINA1 gene and a possible thrombotic risk of these variants in a population-based cohort study. PATIENTS/

methodsThe coding sequence of SERPINA1 was analyzed for the Z (rs28929474), S (rs17580), and other qualifying variants in 28,794 subjects without previous VTE (born 1923-1950, 60% women), who participated in the Malmö Diet and Cancer study (1991-1996). Individuals were followed from baseline until the first event of VTE, death, or 2018.

resultsResequencing the coding sequence of SERPINA1 identified 84 variants in the total study population, 21 synonymous, 62 missense, and 1 loss-of-function variant. Kaplan-Meier analysis showed that homozygosity for the Z allele increased the risk of VTE whereas heterozygosity showed no effect. The S (rs17580) variant was not associated with VTE. Thirty-one rare variants were qualifying and included in collapsing analysis using the following selection criteria, loss of function, in frame deletion or non-benign (PolyPhen-2) missense variants with minor allele frequency (MAF) <0.1%. Combining the rare qualifying variants with the Z variant showed that carrying two alleles (ZZ or compound heterozygotes) showed increased risk. Cox regression analysis revealed an adjusted hazard ratio of 4.5 (95% confidence interval 2.0-10.0) for combinations of the Z variant and rare qualifying variants. One other variant (rs141620200; MAF = 0.002) showed an increased risk of VTE.

conclusionsThe SERPINA1 ZZ genotype and compound heterozygotes for severe AATD are rare but associated with VTE in a population-based Swedish study.

Indexed as

alpha 1-Antitrypsin DeficiencyThrombosisVenous ThromboembolismAgedAged, 80 and overalpha 1-AntitrypsinCase-Control StudiesCohort StudiesFemaleGenotypeHumansMalealpha 1-AntitrypsinSERPINA1 protein, humanalpha-1-antitrypsinepidemiologygeneticsSERPINA1venous thromboembolism

Identifiers

PMID35263815
PMCPMC9314614
OpenAlexW4221134286

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.