Evidence map›Paper›PMID 35332281›Full record

ArticleNature ecology & evolution2022

Genomic signatures of high-altitude adaptation and chromosomal polymorphism in geladas.

Kenneth L Chiou, Mareike C Janiak, India A Schneider-Crease, Sharmi Sen, Ferehiwot Ayele, Idrissa S Chuma, Sascha Knauf, Alemayehu Lemma, Anthony V Signore, Anthony M D'Ippolito and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature ecology & evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 18 institutions in 7 countries.

Kenneth L ChiouCenter for Evolution and Medicine, Arizona State University, Tempe, AZ, USA. chiou@asu.edu.ORCID http://orcid.org/0000-0001-7247-4107
Mareike C JaniakDepartment of Anthropology and Archaeology, University of Calgary, Calgary, Alberta, Canada.ORCID http://orcid.org/0000-0002-7759-2556
India A Schneider-CreaseCenter for Evolution and Medicine, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0002-2699-5304
Sharmi SenDepartment of Anthropology, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-4796-489X
Ferehiwot AyeleCollege of Veterinary Medicine and Agriculture, Addis Ababa University, Debre Zeit, Ethiopia.
Idrissa S ChumaVeterinary Unit, Conservation Science Department, Tanzania National Parks (TANAPA), Arusha, Tanzania.
Sascha KnaufWork Group Neglected Tropical Diseases, Infection Biology Unit, German Primate Center, Leibniz Institute for Primate Research, Göttingen, Germany.ORCID http://orcid.org/0000-0001-5744-4946
Alemayehu LemmaCollege of Veterinary Medicine and Agriculture, Addis Ababa University, Debre Zeit, Ethiopia.
Anthony V SignoreSchool of Biological Sciences, University of Nebraska, Lincoln, NE, USA.ORCID http://orcid.org/0000-0002-0664-0864
Anthony M D'IppolitoUniversity Program in Genetics and Genomics, Duke University, Durham, NC, USA.
Belayneh AbebeAfrican Wildlife Foundation, Debark, Ethiopia.
Abebaw Azanaw HaileEthiopian Wildlife Conservation Authority, Addis Ababa, Ethiopia.
Fanuel KebedeEthiopian Wildlife Conservation Authority, Addis Ababa, Ethiopia.
Peter J FashingDepartment of Anthropology and Environmental Studies Program, California State University Fullerton, Fullerton, CA, USA.
Nga NguyenDepartment of Anthropology and Environmental Studies Program, California State University Fullerton, Fullerton, CA, USA.
Colleen McCannDepartment of Mammals, Bronx Zoo, Wildlife Conservation Society, New York, NY, USA.
Marlys L HouckBeckman Center for Conservation Research, San Diego Zoo Wildlife Alliance, Escondido, CA, USA.
Jeffrey D WallInstitute for Human Genetics, University of California San Francisco, San Francisco, CA, USA.
Andrew S BurrellDepartment of Anthropology, New York University, New York, NY, USA.
Christina M BergeyDepartment of Genetics, Human Genetics Institute of New Jersey, Rutgers University, Piscataway, NJ, USA.ORCID http://orcid.org/0000-0001-8336-8078
Jeffrey RogersHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-7374-6490
Jane E Phillips-ConroyDepartment of Neuroscience, Washington University School of Medicine, St Louis, MO, USA.
Clifford J JollyNew York Consortium in Evolutionary Primatology, New York, NY, USA.
Amanda D MelinDepartment of Anthropology and Archaeology, University of Calgary, Calgary, Alberta, Canada.ORCID http://orcid.org/0000-0002-0612-2514
Jay F StorzSchool of Biological Sciences, University of Nebraska, Lincoln, NE, USA.ORCID http://orcid.org/0000-0001-5448-7924
Amy LuDepartment of Anthropology, Stony Brook University, Stony Brook, NY, USA.ORCID http://orcid.org/0000-0003-4758-216X
Jacinta C BeehnerDepartment of Anthropology, University of Michigan, Ann Arbor, MI, USA.
Thore J BergmanDepartment of Psychology, University of Michigan, Ann Arbor, MI, USA.
Noah Snyder-MacklerCenter for Evolution and Medicine, Arizona State University, Tempe, AZ, USA. nsnyderm@asu.edu.ORCID http://orcid.org/0000-0003-3026-6160
University of Michigan · USUniversity of Washington · USAddis Ababa University · ETCalifornia State University, Fullerton · USUniversity of Calgary · CAUniversity of Nebraska–Lincoln · USBaylor College of Medicine · USDuke University · USFriedrich-Loeffler-Institut · DENew York Consortium in Evolutionary Primatology · USNew York University · USRutgers, The State University of New Jersey · USSan Diego Zoo Institute for Conservation Research · USStony Brook University · USTanzania National Parks · TZUniversity of California, San Francisco · USWashington University in St. Louis · USWildlife Conservation Society · US

Funding

GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
Mutational Pleiotropy, Epistasis, and the Adaptive Evolution of Hemoglobin FunctionR01HL087216 · NHLBI · UNIVERSITY OF NEBRASKA LINCOLN · PI STORZ, JAY · 2008 to 2021
$4.5M
Gene regulatory analysis of social integration and resilience during agingR00AG051764 · NIA · UNIVERSITY OF WASHINGTON · PI SNYDER-MACKLER, NOAH · 2017 to 2019
$746k
NHLBI NIH HHS R01 HL087216NIA NIH HHS R00 AG051764NIA NIH HHS T32 AG000057
6 · The paper itself

Abstract

Primates have adapted to numerous environments and lifestyles but very few species are native to high elevations. Here we investigated high-altitude adaptations in the gelada (Theropithecus gelada), a monkey endemic to the Ethiopian Plateau. We examined genome-wide variation in conjunction with measurements of haematological and morphological traits. Our new gelada reference genome is highly intact and assembled at chromosome-length levels. Unexpectedly, we identified a chromosomal polymorphism in geladas that could potentially contribute to reproductive barriers between populations. Compared with baboons at low altitude, we found that high-altitude geladas exhibit significantly expanded chest circumferences, potentially allowing for greater lung surface area for increased oxygen diffusion. We identified gelada-specific amino acid substitutions in the alpha-chain subunit of adult haemoglobin but found that gelada haemoglobin does not exhibit markedly altered oxygenation properties compared with lowland primates. We also found that geladas at high altitude do not exhibit elevated blood haemoglobin concentrations, in contrast to the normal acclimatization response to hypoxia in lowland primates. The absence of altitude-related polycythaemia suggests that geladas are able to sustain adequate tissue-oxygen delivery despite environmental hypoxia. Finally, we identified numerous genes and genomic regions exhibiting accelerated rates of evolution, as well as gene families exhibiting expansions in the gelada lineage, potentially reflecting altitude-related selection. Our findings lend insight into putative mechanisms of high-altitude adaptation while suggesting promising avenues for functional hypoxia research.

Indexed as

TheropithecusAltitudeAnimalsChromosomesGenomicsHypoxiaOxygenOxygen

Identifiers

PMID35332281
PMCPMC9090980
OpenAlexW4221037422

What Socratic holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.