Evidence map›Paper›PMID 35333290›Full record

ArticleInvestigative ophthalmology & visual science2022

New COL6A6 Variant Causes Autosomal Dominant Retinitis Pigmentosa in a Four-Generation Family.

Veronika Vaclavik, Leila Tiab, Young Joo Sun, Vinit B Mahajan, Alexandre Moulin, Nathalie Allaman-Pillet, Francis L Munier, Daniel F Schorderet

Open access · goldAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Veronika VaclavikJules-Gonin Eye Hospital, University of Lausanne, Lausanne, Switzerland.
Leila TiabInstitute for Research in Ophthalmology, Sion, Switzerland.
Young Joo SunMolecular Surgery Laboratory, Byers Eye Institute, Stanford University, Palo Alto, California, United States.
Vinit B MahajanMolecular Surgery Laboratory, Byers Eye Institute, Stanford University, Palo Alto, California, United States.
Alexandre MoulinJules-Gonin Eye Hospital, University of Lausanne, Lausanne, Switzerland.
Nathalie Allaman-PilletInstitute for Research in Ophthalmology, Sion, Switzerland.
Francis L MunierJules-Gonin Eye Hospital, University of Lausanne, Lausanne, Switzerland.
Daniel F SchorderetInstitute for Research in Ophthalmology, Sion, Switzerland.
Institut de Recherche en Opthalmologie · CHUniversity of Lausanne · CHStanford University · USVA Palo Alto Health Care System · US

Funding

Stanford Vision Research CoreP30EY026877 · NEI · STANFORD UNIVERSITY · PI Jeffrey L Goldberg · 2017 to 2026
$8.0M
NEI NIH HHS P30 EY026877
6 · The paper itself

Abstract

Purpose: To report that variants in the gene for a large lamina basal component protein, COL6A6 (collagen type VI alpha 6 chain, Col6α6), linked to chromosome 3p22.1 causes retinitis pigmentosa (RP) in patients with autosomal dominant transmission (adRP). Methods: A positional-cloning approach, whole exome sequencing, and modeling were used. The proband and several affected family members have been phenotyped and followed for over 12 years. Results: A heterozygous missense variant, c.509C>G (p. Ser170Cys) in exon 2 of COL6A6 (comprised of 36 exons and 2236 amino acids), was observed in a four- generation family and is likely to cause the adRP phenotype. It was identified in 10 affected members. All affected family members had a distinct phenotype: late-onset rod cone dystrophy, with good retained visual acuity, until their late 70s. Immunohistochemistry of human retina showed a dot-like signal at the base of the inner segments of photoreceptors and outer plexiform layer (OPL). The structural modeling of the N7 domain of Col6α6 suggests that the mutant might result in the abnormal cellular localization of collagen VI or malformation of collagen fibers resulting in the loss of its unique filament structure. Conclusions: COL6A6 is widely expressed in human tissues and evolutionary conserved. It is thought to interact with a range of extracellular matrix components. Our findings suggest that this form of RP has long-term useful central visual acuity and a mild progression, which are important considerations for patient counseling.

Indexed as

Collagen Type VICone-Rod DystrophiesRetinitis PigmentosaExonsHumansMutation, MissensePedigreeCOL6A6 protein, humanCollagen Type VI

Identifiers

PMID35333290
PMCPMC8963667
OpenAlexW4220933314

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.