Evidence map›Paper›PMID 35346685›Full record

ArticleThe Journal of biological chemistry2022

Substrate-binding loop interactions with pseudouridine trigger conformational changes that promote catalytic efficiency of pseudouridine kinase PUKI.

Sang-Hoon Kim, Minjeong Kim, Daechan Park, Sujeong Byun, Sangkee Rhee

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Structure Characterization ofFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Sang-Hoon KimDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Minjeong KimDepartment of Molecular Science & Technology, Ajou University, Suwon, Korea.
Daechan ParkDepartment of Molecular Science & Technology, Ajou University, Suwon, Korea; Department of Biological Sciences, Ajou University, Suwon, Korea.
Sujeong ByunDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Sangkee RheeDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea; Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Korea. Electronic address: srheesnu@snu.ac.kr.
Seoul National University · KRAjou University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudouridine, one major RNA modification, is catabolized into uracil and ribose-5'-phosphate by two sequential enzymatic reactions. In the first step, pseudouridine kinase (PUKI) phosphorylates pseudouridine to pseudouridine 5'-monophosphate. High-fidelity catalysis of pseudouridine by PUKI prevents possible disturbance of in vivo pyrimidine homeostasis. However, the molecular basis of how PUKI selectively phosphorylates pseudouridine over uridine with >100-fold greater efficiency despite minor differences in their K

Indexed as

ArabidopsisPseudouridineBiocatalysisCatalysisEscherichia coliKineticsUridinePseudouridineUridinecrystal structureenzyme kineticspseudouridine kinaseRNA modificationsubstrate-induced conformational change

Identifiers

PMID35346685
PMCPMC9061257
OpenAlexW4221028808

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.