Evidence map›Paper›PMID 35349647›Full record

ArticleGenome biology and evolution2022

A Chromosome-Scale Hybrid Genome Assembly of the Extinct Tasmanian Tiger (Thylacinus cynocephalus).

Charles Feigin, Stephen Frankenberg, Andrew Pask

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
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  10. GigaByte (Hong Kong, China) · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Charles FeiginSchool of BioSciences, The University of Melbourne, Parkville, Victoria, Australia.ORCID 0000-0003-4981-5254
Stephen FrankenbergSchool of BioSciences, The University of Melbourne, Parkville, Victoria, Australia.
Andrew PaskSchool of BioSciences, The University of Melbourne, Parkville, Victoria, Australia.
The University of Melbourne · AU

Funding

How to build a gliding mammal: Using natural phenotypic variation to define the molecular regulation of tissue morphogenesisF32GM139240 · NIGMS · PRINCETON UNIVERSITY · PI FEIGIN, CHARLES YAKOV · 2020 to 2022
$100k
NIGMS NIH HHS F32 GM139240
6 · The paper itself

Abstract

The extinct Tasmanian tiger or thylacine (Thylacinus cynocephalus) was a large marsupial carnivore native to Australia. Once ranging across parts of the mainland, the species remained only on the island of Tasmania by the time of European colonization. It was driven to extinction in the early 20th century and is an emblem of native species loss in Australia. The thylacine was a striking example of convergent evolution with placental canids, with which it shared a similar skull morphology. Consequently, it has been the subject of extensive study. While the original thylacine assemblies published in 2018 enabled the first exploration of the species' genome biology, further progress is hindered by the lack of high-quality genomic resources. Here, we present a new chromosome-scale hybrid genome assembly for the thylacine, which compares favorably with many recent de novo marsupial genomes. In addition, we provide homology-based gene annotations, characterize the repeat content of the thylacine genome, and show that consistent with demographic decline, the species possessed a low rate of heterozygosity even compared to extant, threatened marsupials.

Indexed as

Extinction, BiologicalMarsupialiaAnimalsChromosomesFemaleGenomePlacentaPregnancyDasyuromorphiagenomeTasmanian tigerthylacineThylacinus cynocephalus

Identifiers

PMID35349647
PMCPMC9007325
OpenAlexW4220744361

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.