Evidence map›Paper›PMID 35368043›Full record

ArticleScientific reports2022

A whole genome sequencing study of moderate to severe asthma identifies a lung function locus associated with asthma risk.

Diana Chang, Julie Hunkapiller, Tushar Bhangale, Jens Reeder, Kiran Mukhyala, Jennifer Tom, Amy Cowgill, Jan Vogel, William F Forrest, Zia Khan and 14 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Cumulative genetic risk for asthma contributes to disease severity in children with asthma.The journal of allergy and clinical immunology. Global · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Genetics of chronic respiratory disease.Nature reviews. Genetics · 2024
    Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 2 institutions in 2 countries.

Diana ChangGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Julie HunkapillerGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Tushar BhangaleGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Jens ReederGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Kiran MukhyalaGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Jennifer TomGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Amy CowgillGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Jan VogelGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
William F ForrestGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Zia KhanGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Amy StockwellGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Mark I McCarthyGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Tracy L StatonGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Julie OlssonGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Cecile T J HolwegGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Dorothy S CheungGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Hubert ChenGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Matthew J BrauerGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Robert R GrahamGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Timothy BehrensGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Mark S WilsonGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Joseph R ArronGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
David F ChoyGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA. choy.david@gene.com.
Brian L YaspanGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA. yaspan.brian@gene.com.
Maze (United States) · USGene Therapy Laboratory · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have identified many common variant loci associated with asthma susceptibility, but few studies investigate the genetics underlying moderate-to-severe asthma risk. Here, we present a whole-genome sequencing study comparing 3181 moderate-to-severe asthma patients to 3590 non-asthma controls. We demonstrate that asthma risk is genetically correlated with lung function measures and that this component of asthma risk is orthogonal to the eosinophil genetics that also contribute to disease susceptibility. We find that polygenic scores for reduced lung function are associated with younger asthma age of onset. Genome-wide, seven previously reported common asthma variant loci and one previously reported lung function locus, near THSD4, reach significance. We replicate association of the lung function locus in a recently published GWAS of moderate-to-severe asthma patients. We additionally replicate the association of a previously reported rare (minor allele frequency < 1%) coding variant in IL33 and show significant enrichment of rare variant burden in genes from common variant allergic disease loci. Our findings highlight the contribution of lung function genetics to moderate-to-severe asthma risk, and provide initial rare variant support for associations with moderate-to-severe asthma risk at several candidate genes from common variant loci.

Indexed as

AsthmaGenome-Wide Association StudyGenetic Predisposition to DiseaseHumansLungWhole Genome Sequencing

Identifiers

PMID35368043
PMCPMC8976834
OpenAlexW4224240869

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.