Evidence map›Paper›PMID 35384159›Full record

ArticleCancer science2022

Mutational spectrum of ATRX aberrations in neuroblastoma and associated patient and tumor characteristics.

Michael R van Gerven, Eva Bozsaky, Yvette A H Matser, Julian Vosseberg, Sabine Taschner-Mandl, Jan Koster, Godelieve A M Tytgat, Jan J Molenaar, Marlinde van den Boogaard

Open access · goldAbstract read
In one paragraph

Article in Cancer science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

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  14. Mutant ATRX: pathogenesis of ATRX syndrome and cancer.Frontiers in molecular biosciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Michael R van GervenPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.ORCID https://orcid.org/0000-0001-5241-8810
Eva BozsakyTumor Biology Group, St Anna Children's Cancer Research Institute, Vienna, Austria.
Yvette A H MatserPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Julian VossebergTheoretical Biology and Bioinformatics, Department of Biology, Faculty of Science, Utrecht University, Utrecht, The Netherlands.
Sabine Taschner-MandlTumor Biology Group, St Anna Children's Cancer Research Institute, Vienna, Austria.
Jan KosterDepartment of Oncogenomics, Amsterdam UMC, Location AMC, Amsterdam, The Netherlands.
Godelieve A M TytgatPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Jan J MolenaarPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Marlinde van den BoogaardPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Princess Máxima Center · NLCancer Research Institute of the Slovak Academy of Sciences · SKAmsterdam University Medical Centers · NLUniversity of Applied Sciences Utrecht · NLUtrecht University · NL

Funding

H2020 European Research Council 716079H2020 European Research Council 826121
6 · The paper itself

Abstract

Neuroblastoma is the most common extracranial solid tumor in children. The chromatin remodeler ATRX is frequently mutated in high-risk patients with a poor prognosis. Although many studies have reported ATRX aberrations and the associated clinical characteristics in neuroblastoma, a comprehensive overview is currently lacking. In this study, we extensively characterize the mutational spectrum of ATRX aberrations in neuroblastoma tumors reported in previous studies and present an overview of patient and tumor characteristics. We collected the data of a total of 127 neuroblastoma patients and three cell lines with ATRX aberrations originating from 20 papers. We subdivide the ATRX aberrations into nonsense, missense, and multiexon deletions (MEDs) and show that 68% of them are MEDs. Of these MEDs, 75% are predicted to be in-frame. Furthermore, we identify a missense mutational hotspot region in the helicase domain. We also confirm that all three ATRX mutation types are more often identified in patients diagnosed at an older age, but still approximately 40% of the patients are aged 5 years or younger at diagnosis. Surprisingly, we found that 11q deletions are enriched in neuroblastomas with ATRX deletions compared to a reference cohort, but not in neuroblastomas with ATRX point mutations. Taken together, our data emphasizes a distinct ATRX mutation spectrum in neuroblastoma, which should be considered when studying molecular phenotypes and therapeutic strategies.

Indexed as

NeuroblastomaX-linked Nuclear ProteinChromatinDNA HelicasesHumansMutationPhenotypeATRX protein, humanChromatinDNA HelicasesX-linked Nuclear Protein11q deletionALTATRXneuroblastomapediatric oncology

Identifiers

PMID35384159
PMCPMC9207354
OpenAlexW4224022807

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.