Evidence map›Paper›PMID 35386392›Full record

ArticleBiophysics reports2021

Lipid Species Dependent Vesicles Clustering Caused by alpha-Synuclein as Revealed by Single-Vesicle Imaging with Total Internal Reflection Fluorescence Microscopy.

Chinta Mani Aryal, Owen Tyoe, Jiajie Diao

Open access · diamondAbstract read
In one paragraph

Article in Biophysics reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Chinta Mani AryalDepartment of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA.
Owen TyoeDepartment of Physics, University of Cincinnati, Cincinnati, OH 45221, USA.
Jiajie DiaoDepartment of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA.
University of Cincinnati Medical Center · USUniversity of Cincinnati · US

Funding

The crosstalk of organelles involved in autophagosome biogenesisR35GM128837 · NIGMS · UNIVERSITY OF CINCINNATI · PI Jiajie Diao · 2018 to 2026
$3.3M
The role of VAMP2 in alpha-synuclein function and pathologyR01NS121077 · NINDS · UNIVERSITY OF CINCINNATI · PI BURRE, JACQUELINE, DIAO, JIAJIE · 2021 to 2025
$1.9M
Single-molecule study of alpha-synucleinR21AG061600 · NIA · UNIVERSITY OF CINCINNATI · PI DIAO, JIAJIE · 2019 to 2020
$441k
NIA NIH HHS R21 AG061600NIGMS NIH HHS R35 GM128837NINDS NIH HHS R01 NS121077
6 · The paper itself

Abstract

Single-molecule methods have been applied to study the mechanisms of many bio-physical systems that occur on the nanometer scale. To probe the dynamics of the such systems including vesicle docking, tethering, fusion, trafficking, protein-membrane interactions, etc., and to obtain reproducible experimental data; proper methodology and framework are crucial. Here, we address this need by developing a protocol for immobilization of vesicles composed of synthetic lipids and measurement using total internal reflection fluorescence (TIRF) microscopy. Furthermore, we demonstrate applications including vesicle clustering mediated by proteins such as alpha-Synuclein (αSyn) and the influence of external ions by using TIRF microscopy. Moreover, we use this method to quantify the dependence of lipid composition and charge on vesicle clustering mediated by αSyn which is based on the methods previously reported.

Indexed as

alpha-SynucleinClusteringLipidsSingle moleculeTotal Internal Reflection Fluorescence (TIRF) MicroscopyVesicles

Identifiers

PMID35386392
PMCPMC8982331
OpenAlexW4205901366

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.