Evidence map›Paper›PMID 35397008›Full record

ArticleArchives of microbiology2022

Genome analysis of Pseudomonas chlororaphis subsp. aurantiaca mutant strains with increased production of phenazines.

Anastasia I Liaudanskaya, Pavel V Vychik, Natalia P Maximova, Katsiaryna G Verameyenka

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Anastasia I LiaudanskayaBelarusian State University, Nezavisimisty Ave. 4, 220030, Minsk, Belarus. liaudanskaya@bsu.by.ORCID http://orcid.org/0000-0002-3735-537X
Pavel V VychikBelarusian State University, Nezavisimisty Ave. 4, 220030, Minsk, Belarus.
Natalia P MaximovaBelarusian State University, Nezavisimisty Ave. 4, 220030, Minsk, Belarus.
Katsiaryna G VerameyenkaBelarusian State University, Nezavisimisty Ave. 4, 220030, Minsk, Belarus.
Belarusian State University · BY

Funding

Belarusian State University 20191129
6 · The paper itself

Abstract

Genomes of three strains-phenazine producers-Pseudomonas chlororaphis subsp. aurantiaca (B-162 (wild type), mutant strain B-162/255, and its derivative B-162/17) were sequenced and compared. Comparison of a wild-type strain and B-162/255 mutant genomes revealed 32 mutations. 19 new mutations were detected in the genome of B-162/17. Further bioinformatics analysis allowed us to predict mutant protein functions and secondary structures of five gene products, mutations which might potentially influence phenazine synthesis and secretion in Pseudomonas bacteria. These genes encode phenylalanine hydroxylase transcriptional activator PhhR, type I secretion system permease/ATPase, transcriptional regulator MvaT, GacA response regulator, and histidine kinase. Amino acid substitutions were found in domains of studied proteins. One deletion in an intergenic region could affect a potential transcription factor binding site that participates in the regulation of gene that encodes ABC transporter.

Indexed as

PhenazinesPseudomonasBacterial ProteinsBacterial ProteinsPhenazinesAromatic pathwayGenome assemblyMutagenesisPhenazinesPseudomonas bacteria

Identifiers

PMID35397008
OpenAlexW4223543852

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.