Evidence map›Paper›PMID 35408697›Full record

ArticleMolecules (Basel, Switzerland)2022

Preclassification of Broadband and Sparse Infrared Data by Multiplicative Signal Correction Approach.

Hafeez Ur Rehman, Valeria Tafintseva, Boris Zimmermann, Johanne Heitmann Solheim, Vesa Virtanen, Rubina Shaikh, Ervin Nippolainen, Isaac Afara, Simo Saarakkala, Lassi Rieppo and 4 more

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Hafeez Ur RehmanFaculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway.ORCID 0000-0002-7400-4026
Valeria TafintsevaFaculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway.ORCID 0000-0001-6015-0893
Boris ZimmermannFaculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway.ORCID 0000-0001-5046-520X
Johanne Heitmann SolheimFaculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway.
Vesa VirtanenResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, 90570 Oulu, Finland.ORCID 0000-0002-5797-5365
Rubina ShaikhDepartment of Applied Physics, University of Eastern Finland, 70210 Kuopio, Finland.
Ervin NippolainenDepartment of Applied Physics, University of Eastern Finland, 70210 Kuopio, Finland.ORCID 0000-0002-1317-2683
Isaac AfaraDepartment of Applied Physics, University of Eastern Finland, 70210 Kuopio, Finland.
Simo SaarakkalaResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, 90570 Oulu, Finland.ORCID 0000-0003-2850-5484
Lassi RieppoResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, 90570 Oulu, Finland.
Patrick KrebsInstitute of Analytical and Bioanalytical Chemistry, Ulm University, 89081 Ulm, Germany.
Polina FominaInstitute of Analytical and Bioanalytical Chemistry, Ulm University, 89081 Ulm, Germany.ORCID 0000-0002-8315-7948
Boris MizaikoffInstitute of Analytical and Bioanalytical Chemistry, Ulm University, 89081 Ulm, Germany.
Achim KohlerFaculty of Science and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway.

Funding

Europe Union's Horizon 2020 Research and Innovation Programme (H2020-ICT-2016-2017) project MIRACLE Grant Agreement Number 780598
6 · The paper itself

Abstract

Preclassification of raw infrared spectra has often been neglected in scientific literature. Separating spectra of low spectral quality, due to low signal-to-noise ratio, presence of artifacts, and low analyte presence, is crucial for accurate model development. Furthermore, it is very important for sparse data, where it becomes challenging to visually inspect spectra of different natures. Hence, a preclassification approach to separate infrared spectra for sparse data is needed. In this study, we propose a preclassification approach based on Multiplicative Signal Correction (MSC). The MSC approach was applied on human and the bovine knee cartilage broadband Fourier Transform Infrared (FTIR) spectra and on a sparse data subset comprising of only seven wavelengths. The goal of the preclassification was to separate spectra with analyte-rich signals (i.e., cartilage) from spectra with analyte-poor (and high-matrix) signals (i.e., water). The human datasets 1 and 2 contained 814 and 815 spectra, while the bovine dataset contained 396 spectra. A pure water spectrum was used as a reference spectrum in the MSC approach. A threshold for the root mean square error (RMSE) was used to separate cartilage from water spectra for broadband and the sparse spectral data. Additionally, standard noise-to-ratio and principle component analysis were applied on broadband spectra. The fully automated MSC preclassification approach, using water as reference spectrum, performed as well as the manual visual inspection. Moreover, it enabled not only separation of cartilage from water spectra in broadband spectral datasets, but also in sparse datasets where manual visual inspection cannot be applied.

Indexed as

LightWaterAnimalsCattleHumansPrincipal Component AnalysisSpectroscopy, Fourier Transform InfraredWaterOPUSPCAquality spectraquantum cascade laserssparse spectraspectral preclassificationwater spectrum

Identifiers

PMID35408697
PMCPMC9000438

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.