Evidence map›Paper›PMID 35425962›Full record

ArticleCancer research2022

Combinatorial Inactivation of Tumor Suppressors Efficiently Initiates Lung Adenocarcinoma with Therapeutic Vulnerabilities.

Maryam Yousefi, Gábor Boross, Carly Weiss, Christopher W Murray, Jess D Hebert, Hongchen Cai, Emily L Ashkin, Saswati Karmakar, Laura Andrejka, Leo Chen and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. A STAG2-PAXIP1/PAGR1 axis suppresses lung tumorigenesis.The Journal of experimental medicine · 2025
    Article
  6. Review
  7. Review
  8. Fully accessible fitness landscape of oncogene-negative lung adenocarcinoma.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Review
  11. Article
  12. Applications of CRISPR screening to lung cancer treatment.Frontiers in cell and developmental biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 2 countries.

Maryam Yousefi *Department of Genetics, Stanford University School of Medicine, Stanford, California.
Gábor Boross *Department of Biology, Stanford University, Stanford, California.ORCID 0000-0002-7208-5678
Carly WeissDepartment of Biology, Stanford University, Stanford, California.
Christopher W MurrayCancer Biology Program, Stanford University School of Medicine, Stanford, California.
Jess D HebertDepartment of Genetics, Stanford University School of Medicine, Stanford, California.ORCID 0000-0002-8778-5941
Hongchen CaiDepartment of Genetics, Stanford University School of Medicine, Stanford, California.ORCID 0000-0002-5921-5773
Emily L AshkinCancer Biology Program, Stanford University School of Medicine, Stanford, California.
Saswati KarmakarDepartment of Genetics, Stanford University School of Medicine, Stanford, California.ORCID 0000-0003-0315-5924
Laura AndrejkaDepartment of Genetics, Stanford University School of Medicine, Stanford, California.ORCID 0000-0002-2202-5626
Leo ChenDepartment of Genetics, Stanford University School of Medicine, Stanford, California.
Minwei WangDepartment of Genetics, Stanford University School of Medicine, Stanford, California.
Min K TsaiDepartment of Genetics, Stanford University School of Medicine, Stanford, California.ORCID 0000-0003-4732-4259
Wen-Yang LinDepartment of Genetics, Stanford University School of Medicine, Stanford, California.
Chuan LiDepartment of Biology, Stanford University, Stanford, California.ORCID 0000-0002-4381-3891
Pegah YakhchalianDepartment of Medicine, David Geffen School of Medicine at University of California, Los Angeles, Los Angeles, California.ORCID 0000-0003-4646-2430
Caterina I ColónCancer Biology Program, Stanford University School of Medicine, Stanford, California.ORCID 0000-0001-6073-8793
Su-Kit ChewCancer Evolution and Genome Instability Laboratory, University College London Cancer Institute, London, United Kingdom.
Pauline ChuDepartment of Pathology, Stanford University School of Medicine, Stanford, California.
Charles SwantonCancer Evolution and Genome Instability Laboratory, University College London Cancer Institute, London, United Kingdom.ORCID 0000-0002-4299-3018
Christian A KunderDepartment of Pathology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0003-1514-7550
Dmitri A PetrovDepartment of Biology, Stanford University, Stanford, California.ORCID 0000-0002-3664-9130
Monte M WinslowDepartment of Genetics, Stanford University School of Medicine, Stanford, California.
Stanford University · USStanford Medicine · USThe Francis Crick Institute · GBUniversity of California, Los Angeles · US

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI MICHAEL KENNEY · 2007 to 2026
$71.4M
Leveraging innovative technologies in basic and clinical cancer researchT32CA009302 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI, Aaron M Newman · 1985 to 2026
$19.1M
Genomics of rapid adaptation in the lab and in the wildR35GM118165 · NIGMS · STANFORD UNIVERSITY · PI Dmitri Petrov · 2016 to 2026
$8.3M
Unraveling mechanisms of tumor suppression in lung cancerR01CA234349 · NCI · STANFORD UNIVERSITY · PI PETROV, DMITRI, WINSLOW, MONTE MEIER · 2019 to 2023
$2.4M
(PQ4) Quantitative and multiplexed analysis of gene function in cancer in vivoR01CA231253 · NCI · STANFORD UNIVERSITY · PI PETROV, DMITRI, WINSLOW, MONTE MEIER · 2018 to 2022
$2.3M
Molecular dissection of Lkb1-mediated tumor suppressionR01CA230919 · NCI · STANFORD UNIVERSITY · PI WINSLOW, MONTE MEIER · 2018 to 2022
$2.1M
Pancreatic cancer stem cells: PD2-mediated novel mechanistic link and metabolomic alterationsK00CA234962 · NCI · STANFORD UNIVERSITY · PI KARMAKAR, SASWATI · 2021 to 2024
$363k
Therapeutic dissection of genotype-specific lung cancer vulnerabilitiesF32CA236311 · NCI · STANFORD UNIVERSITY · PI YOUSEFI, MARYAM · 2019 to 2021
$169k
Howard Hughes Medical Institute GT14928NCI NIH HHS F32 CA236311NCI NIH HHS K00 CA234962NCI NIH HHS P30 CA124435NCI NIH HHS R01 CA230919NCI NIH HHS R01 CA231253NCI NIH HHS R01 CA234349NCI NIH HHS T32 CA009302NIGMS NIH HHS R35 GM118165
6 · The paper itself

Abstract

Lung cancer is the leading cause of cancer death worldwide, with lung adenocarcinoma being the most common subtype. Many oncogenes and tumor suppressor genes are altered in this cancer type, and the discovery of oncogene mutations has led to the development of targeted therapies that have improved clinical outcomes. However, a large fraction of lung adenocarcinomas lacks mutations in known oncogenes, and the genesis and treatment of these oncogene-negative tumors remain enigmatic. Here, we perform iterative in vivo functional screens using quantitative autochthonous mouse model systems to uncover the genetic and biochemical changes that enable efficient lung tumor initiation in the absence of oncogene alterations. Generation of hundreds of diverse combinations of tumor suppressor alterations demonstrates that inactivation of suppressors of the RAS and PI3K pathways drives the development of oncogene-negative lung adenocarcinoma. Human genomic data and histology identified RAS/MAPK and PI3K pathway activation as a common feature of an event in oncogene-negative human lung adenocarcinomas. These Onc-negativeRAS/PI3K tumors and related cell lines are vulnerable to pharmacologic inhibition of these signaling axes. These results transform our understanding of this prevalent yet understudied subtype of lung adenocarcinoma. SIGNIFICANCE: To address the large fraction of lung adenocarcinomas lacking mutations in proto-oncogenes for which targeted therapies are unavailable, this work uncovers driver pathways of oncogene-negative lung adenocarcinomas and demonstrates their therapeutic vulnerabilities.

Indexed as

Adenocarcinoma of LungLung NeoplasmsAnimalsGenes, Tumor SuppressorHumansMiceMutationOncogenesPhosphatidylinositol 3-KinasesProto-Oncogene Proteins p21(ras)Phosphatidylinositol 3-KinasesProto-Oncogene Proteins p21(ras)

Identifiers

PMID35425962
PMCPMC9022333
OpenAlexW4223925666

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.