Evidence map›Paper›PMID 35435236›Full record

ArticleThe Plant cell2022

Integrated omics reveal novel functions and underlying mechanisms of the receptor kinase FERONIA in Arabidopsis thaliana.

Ping Wang, Natalie M Clark, Trevor M Nolan, Gaoyuan Song, Parker M Bartz, Ching-Yi Liao, Christian Montes-Serey, Ella Katz, Joanna K Polko, Joseph J Kieber and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Unveiling FERONIA receptor kinase-mediated cellular mechanisms with a small-molecule inhibitor.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Sterols in plant biologyCell surface (Amsterdam, Netherlands) · 2025
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Structure and growth of plant cell walls.Nature reviews. Molecular cell biology · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Integrating omics databases for enhanced crop breeding.Journal of integrative bioinformatics · 2023
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Ping WangDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0002-4484-6329
Natalie M ClarkDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0003-0988-321X
Trevor M NolanDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0003-1362-2557
Gaoyuan SongDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0003-1633-9159
Parker M BartzDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0002-0963-9324
Ching-Yi LiaoDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0002-5050-2995
Christian Montes-SereyDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0003-1249-2308
Ella KatzDepartment of Plant Science, University of California, Davis, California 95616, USA.ORCID 0000-0003-1619-5597
Joanna K PolkoDepartment of Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA.ORCID 0000-0003-2361-4200
Joseph J KieberDepartment of Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA.ORCID 0000-0002-5766-812X
Daniel J KliebensteinDepartment of Plant Science, University of California, Davis, California 95616, USA.ORCID 0000-0001-5759-3175
Diane C BasshamDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0001-7411-9360
Justin W WalleyDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0001-7553-2237
Yanhai YinDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0002-3044-9701
Hongqing GuoDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0003-1498-3733
Iowa State University · USUniversity of California, Davis · USUniversity of North Carolina at Chapel Hill · US

Funding

Crosstalk between Brassinosteroid and autophagy pathways in the regulation of plant growth and stress responses: Equipment SupplementR01GM120316 · NIGMS · IOWA STATE UNIVERSITY · PI DIANE C BASSHAM, Justin William Walley · 2017 to 2026
$2.0M
NIGMS NIH HHS R01 GM120316
6 · The paper itself

Abstract

The receptor kinase FERONIA (FER) is a versatile regulator of plant growth and development, biotic and abiotic stress responses, and reproduction. To gain new insights into the molecular interplay of these processes and to identify new FER functions, we carried out quantitative transcriptome, proteome, and phosphoproteome profiling of Arabidopsis (Arabidopsis thaliana) wild-type and fer-4 loss-of-function mutant plants. Gene ontology terms for phytohormone signaling, abiotic stress, and biotic stress were significantly enriched among differentially expressed transcripts, differentially abundant proteins, and/or misphosphorylated proteins, in agreement with the known roles for FER in these processes. Analysis of multiomics data and subsequent experimental evidence revealed previously unknown functions for FER in endoplasmic reticulum (ER) body formation and glucosinolate biosynthesis. FER functions through the transcription factor NAI1 to mediate ER body formation. FER also negatively regulates indole glucosinolate biosynthesis, partially through NAI1. Furthermore, we found that a group of abscisic acid (ABA)-induced transcription factors is hypophosphorylated in the fer-4 mutant and demonstrated that FER acts through the transcription factor ABA INSENSITIVE5 (ABI5) to negatively regulate the ABA response during cotyledon greening. Our integrated omics study, therefore, reveals novel functions for FER and provides new insights into the underlying mechanisms of FER function.

Indexed as

ArabidopsisArabidopsis ProteinsAbscisic AcidCarrier ProteinsGene Expression Regulation, PlantGlucosinolatesPhosphotransferasesTranscription FactorsAbscisic AcidArabidopsis ProteinsCarrier ProteinsGlucosinolatesPhosphotransferasesTranscription Factors

Identifiers

PMID35435236
PMCPMC9252503
OpenAlexW4224291860

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.