Evidence map›Paper›PMID 35444202›Full record

ArticleNature communications2022

Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams.

Susheel Bhanu Busi, Massimo Bourquin, Stilianos Fodelianakis, Grégoire Michoud, Tyler J Kohler, Hannes Peter, Paraskevi Pramateftaki, Michail Styllas, Matteo Tolosano, Vincent De Staercke and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

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  11. Ciprofloxacin-driven purifying selection on viral genomes accelerates soil NProceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Susheel Bhanu Busi *Systems Ecology Group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.ORCID 0000-0001-7559-3400
Massimo Bourquin *River Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.ORCID 0000-0003-4187-7485
Stilianos Fodelianakis *River Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Grégoire MichoudRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.ORCID 0000-0003-1071-9900
Tyler J KohlerRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Hannes PeterRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Paraskevi PramateftakiRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Michail StyllasRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.ORCID 0000-0003-4385-0008
Matteo TolosanoRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Vincent De StaerckeRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Martina SchönRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.ORCID 0000-0002-6437-8366
Laura de NiesSystems Ecology Group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Ramona MarascoBiological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.ORCID 0000-0003-4776-7519
Daniele DaffonchioBiological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Leïla EzzatRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Paul WilmesSystems Ecology Group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg. paul.wilmes@uni.lu.ORCID 0000-0002-6478-2924
Tom J BattinRiver Ecosystems Laboratory, Center for Alpine and Polar Environmental Research (ALPOLE), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland. tom.battin@epfl.ch.ORCID 0000-0001-5361-2033

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In glacier-fed streams, ecological windows of opportunity allow complex microbial biofilms to develop and transiently form the basis of the food web, thereby controlling key ecosystem processes. Using metagenome-assembled genomes, we unravel strategies that allow biofilms to seize this opportunity in an ecosystem otherwise characterized by harsh environmental conditions. We observe a diverse microbiome spanning the entire tree of life including a rich virome. Various co-existing energy acquisition pathways point to diverse niches and the exploitation of available resources, likely fostering the establishment of complex biofilms during windows of opportunity. The wide occurrence of rhodopsins, besides chlorophyll, highlights the role of solar energy capture in these biofilms while internal carbon and nutrient cycling between photoautotrophs and heterotrophs may help overcome constraints imposed by oligotrophy in these habitats. Mechanisms potentially protecting bacteria against low temperatures and high UV-radiation are also revealed and the selective pressure of this environment is further highlighted by a phylogenomic analysis differentiating important components of the glacier-fed stream microbiome from other ecosystems. Our findings reveal key genomic underpinnings of adaptive traits contributing to the success of complex biofilms to exploit environmental opportunities in glacier-fed streams, which are now rapidly changing owing to global warming.

Indexed as

Ice CoverMicrobiotaBiodiversityBiofilmsEcosystemRivers

Identifiers

PMID35444202
PMCPMC9021309

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.