Evidence map›Paper›PMID 35455716›Full record

ArticleJournal of personalized medicine2022

Machine-Learning-Based Late Fusion on Multi-Omics and Multi-Scale Data for Non-Small-Cell Lung Cancer Diagnosis.

Francisco Carrillo-Perez, Juan Carlos Morales, Daniel Castillo-Secilla, Olivier Gevaert, Ignacio Rojas, Luis Javier Herrera

Abstract read
In one paragraph

Article in Journal of personalized medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

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  16. Smart nanoplatforms for early detection and immune modulation in lung cancer.Frontiers in bioengineering and biotechnology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Francisco Carrillo-PerezDepartment of Computer Architecture and Technology, University of Granada, C.I.T.I.C., Periodista Rafael Gómez Montero, 2, 18170 Granada, Spain.ORCID 0000-0003-0974-4092
Juan Carlos MoralesDepartment of Computer Architecture and Technology, University of Granada, C.I.T.I.C., Periodista Rafael Gómez Montero, 2, 18170 Granada, Spain.
Daniel Castillo-SecillaFujitsu Technology Solutions S.A, CoE Data Intelligence, Camino del Cerro de los Gamos, 1, Pozuelo de Alarcón, 28224 Madrid, Spain.ORCID 0000-0002-7380-1023
Olivier GevaertStanford Center for Biomedical Informatics Research (BMIR), Department of Medicine, Stanford University, 1265 Welch Rd, Stanford, CA 94305, USA.ORCID 0000-0002-9965-5466
Ignacio RojasDepartment of Computer Architecture and Technology, University of Granada, C.I.T.I.C., Periodista Rafael Gómez Montero, 2, 18170 Granada, Spain.ORCID 0000-0002-1033-5635
Luis Javier HerreraDepartment of Computer Architecture and Technology, University of Granada, C.I.T.I.C., Periodista Rafael Gómez Montero, 2, 18170 Granada, Spain.ORCID 0000-0003-3220-9389

Funding

Multi-scale modeling of glioma for the prediction of treatment response, treatment monitoring and treatment allocationR01CA260271 · NCI · STANFORD UNIVERSITY · PI GEVAERT, OLIVIER · 2021 to 2025
$3.1M
NCI NIH HHS R01 CA260271
6 · The paper itself

Abstract

Differentiation between the various non-small-cell lung cancer subtypes is crucial for providing an effective treatment to the patient. For this purpose, machine learning techniques have been used in recent years over the available biological data from patients. However, in most cases this problem has been treated using a single-modality approach, not exploring the potential of the multi-scale and multi-omic nature of cancer data for the classification. In this work, we study the fusion of five multi-scale and multi-omic modalities (RNA-Seq, miRNA-Seq, whole-slide imaging, copy number variation, and DNA methylation) by using a late fusion strategy and machine learning techniques. We train an independent machine learning model for each modality and we explore the interactions and gains that can be obtained by fusing their outputs in an increasing manner, by using a novel optimization approach to compute the parameters of the late fusion. The final classification model, using all modalities, obtains an F1 score of 96.81±1.07, an AUC of 0.993±0.004, and an AUPRC of 0.980±0.016, improving those results that each independent model obtains and those presented in the literature for this problem. These obtained results show that leveraging the multi-scale and multi-omic nature of cancer data can enhance the performance of single-modality clinical decision support systems in personalized medicine, consequently improving the diagnosis of the patient.

Indexed as

artificial neural networksdeep learninginformation fusionmachine learningNSCLCpersonalized medicine

Identifiers

PMID35455716
PMCPMC9025878

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.