Evidence map›Paper›PMID 35456456›Full record

ArticleGenes2022

Genomic and Transcriptomic Characterization of Atypical Recurrent Flank Alopecia in the Cesky Fousek.

Silvie Neradilová, Alexandria M Schauer, Jessica J Hayward, Magdalena A T Brunner, Magdalena Bohutínská, Vidhya Jagannathan, Laurie B Connell, Adam R Boyko, Monika M Welle, Barbora Černá Bolfíková

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Silvie NeradilováDepartment of Animal Science and Food Processing, Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, 16500 Prague, Czech Republic.ORCID 0000-0001-8633-9213
Alexandria M SchauerInstitute of Animal Pathology, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland.
Jessica J HaywardDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0001-6213-5013
Magdalena A T BrunnerInstitute of Animal Pathology, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland.
Magdalena BohutínskáDepartment of Botany, Faculty of Science, Charles University, 12800 Prague, Czech Republic.ORCID 0000-0001-6924-2233
Vidhya JagannathanInstitute of Genetics, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland.ORCID 0000-0002-8155-0041
Laurie B ConnellMolecular & Biomedical Sciences and School of Marine Sciences, University of Maine, Orono, ME 04469, USA.
Adam R BoykoDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA.
Monika M WelleInstitute of Animal Pathology, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland.
Barbora Černá BolfíkováDepartment of Animal Science and Food Processing, Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, 16500 Prague, Czech Republic.ORCID 0000-0001-8059-4889
University of Bern · CHCornell University · USCzech University of Life Sciences Prague · CZCharles University · CZUniversity of Maine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Non-inflammatory alopecia is a frequent skin problem in dogs, causing damaged coat integrity and compromised appearance of affected individuals. In this study, we examined the Cesky Fousek breed, which displays atypical recurrent flank alopecia (aRFA) at a high frequency. This type of alopecia can be quite severe and is characterized by seasonal episodes of well demarcated alopecic areas without hyperpigmentation. The genetic component responsible for aRFA remains unknown. Thus, here we aimed to identify variants involved in aRFA using a combination of histological, genomic, and transcriptomic data. We showed that aRFA is histologically similar to recurrent flank alopecia, characterized by a lack of anagen hair follicles and the presence of severely shortened telogen or kenogen hair follicles. We performed a genome-wide association study (GWAS) using 216 dogs phenotyped for aRFA and identified associations on chromosomes 19, 8, 30, 36, and 21, highlighting 144 candidate genes, which suggests a polygenic basis for aRFA. By comparing the skin cell transcription pattern of six aRFA and five control dogs, we identified 236 strongly differentially expressed genes (DEGs). We showed that the GWAS genes associated with aRFA are often predicted to interact with DEGs, suggesting their joint contribution to the development of the disease. Together, these genes affect four major metabolic pathways connected to aRFA: collagen formation, muscle structure/contraction, lipid metabolism, and the immune system.

Indexed as

Genome-Wide Association StudyTranscriptomeAlopeciaAnimalsDogsHair FollicleSkinatypical recurrent flank alopeciacanine alopeciaCesky Fousekdifferential gene expressiondogGWASRNA-seqskin biopsies

Identifiers

PMID35456456
PMCPMC9033119
OpenAlexW4224214465

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.