Evidence map›Paper›PMID 35464471›Full record

ArticleFrontiers in immunology2022

Deconvolution of Adult T-Cell Leukemia/Lymphoma With Single-Cell RNA-Seq Using Frozen Archived Skin Tissue Reveals New Subset of Cancer-Associated Fibroblast.

Eun-Hye Joo, Jai Hee Bae, Jihye Park, Yoon Ji Bang, Joseph Han, Nicholas Gulati, Jong-Il Kim, Chung-Gyu Park, Woong-Yang Park, Hyun Je Kim

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Eun-Hye JooSamsung Genomic Institute, Samsung Medical Center, Seoul, South Korea.
Jai Hee BaeDepartment of Dermatology, Samsung Medical Center, Seoul, South Korea.
Jihye ParkDepartment of Dermatology, Samsung Medical Center, Seoul, South Korea.
Yoon Ji BangDepartment of Biomedical Science, Seoul National University Graduate School, Seoul, South Korea.
Joseph HanDepartment of Dermatology, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Nicholas GulatiDepartment of Dermatology, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Jong-Il KimGenome Medicine Institute, Seoul National University College of Medicine, Seoul, South Korea.
Chung-Gyu ParkDepartment of Biomedical Science, Seoul National University Graduate School, Seoul, South Korea.
Woong-Yang ParkSamsung Genomic Institute, Samsung Medical Center, Seoul, South Korea.
Hyun Je KimGenome Medicine Institute, Seoul National University College of Medicine, Seoul, South Korea.
Seoul National University · KRIcahn School of Medicine at Mount Sinai · USSamsung Medical Center · KRSamsung (South Korea) · KRSungkyunkwan University · KR

Funding

Skin Biology and Diseases Resource-based Center at Mount SinaiP30AR079200 · NIAMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Elena Ezhkova · 2021 to 2026
$5.2M
NIAMS NIH HHS P30 AR079200
6 · The paper itself

Abstract

Adult T-cell Leukemia/Lymphoma (ATLL) is a rare aggressive T-cell malignancy caused by human T-cell leukemia virus type 1 (HTLV-1) infection. However, little is known about the underlying activated molecular pathways at the single cell level. Moreover, the intercellular communications between the tumor microenvironment (TME) and tumor cells in this malignancy are currently unknown. Difficulties in harvesting fresh tissue in a clinical setting have hampered our deeper understanding of this malignancy. Herein, we examined ATLL using archived fresh frozen tissue after biopsy using single-cell RNA sequencing (scRNA-seq) with T-cell receptor (TCR) clonal analysis. Highly clonal tumor cells showed multiple activating pathways, suggesting dynamic evolution of the malignancy. By dissecting diverse cell types comprising the TME, we identified a novel subset of cancer-associated fibroblast, which showed enriched epidermal growth factor receptor (EGFR)-related transcripts including early growth response 1 and 2 (EGR1 and EGR2). Cancer associated fibroblasts (CAFs) of ATLL play an important role for CD4 T-cell proliferation

Indexed as

Cancer-Associated FibroblastsHuman T-lymphotropic virus 1Leukemia-Lymphoma, Adult T-CellLymphomaAdultErbB ReceptorsHumansReceptors, Antigen, T-CellRNA-SeqTumor MicroenvironmentErbB ReceptorsReceptors, Antigen, T-Celladult T-cell leukemia/lymphomacancer-associated fibroblastepidermal growth factor receptor pathwayfrozen tissuesingle-cell RNA-seq

Identifiers

PMID35464471
PMCPMC9021607
OpenAlexW4225975973

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.