Evidence map›Paper›PMID 35471663›Full record

ArticleGenetics2022

Meiotic cDNA libraries reveal gene truncations and mitochondrial proteins important for competitive fitness in Saccharomyces cerevisiae.

Tina L Sing, Katie Conlon, Stephanie H Lu, Nicole Madrazo, Kaitlin Morse, Juliet C Barker, Ina Hollerer, Gloria A Brar, Peter H Sudmant, Elçin Ünal

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 59% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Tina L SingDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-2166-969X
Katie ConlonDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Stephanie H LuDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Nicole MadrazoDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0003-3731-0451
Kaitlin MorseDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Juliet C BarkerDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Ina HollererDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Gloria A BrarDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-8560-9581
Peter H SudmantDepartment of Integrative Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-9573-8248
Elçin ÜnalDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-6768-609X
University of California, Berkeley · US

Funding

Illuminating the gene regulatory strategies underlying yeast meiosis and beyondR35GM134886 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Gloria Ann Brar · 2020 to 2026
$3.1M
Defining the programmed proteome rejuvenation underlying gametogenesisR01AG071869 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI BRAR, GLORIA ANN, JOVANOVIC, MARKO · 2021 to 2025
$2.9M
The evolution and diversity of mutation, molecular fidelity, and genome structureR35GM142916 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Peter Heshedahl Sudmant · 2021 to 2026
$2.5M
ILLUMINATING CELLULAR AGING PATHWAYS THROUGH GAMETOGENESISDP2AG055946 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI UNAL, ELCIN · 2016 to 2016
$2.2M
Elucidating Cellular Aging and Quality Control Pathways through Meiotic DifferentiationR01AG071801 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI UNAL, ELCIN · 2021 to 2025
$1.9M
Transcriptional interference through LUTI mRNA expression in developmentF31HD103399 · NICHD · UNIVERSITY OF CALIFORNIA BERKELEY · PI MORSE, KAITLIN · 2020 to 2023
$124k
NIA NIH HHS DP2 AG055946NIA NIH HHS R01 AG071801NIA NIH HHS R01 AG071869NICHD NIH HHS F31 HD103399NIGMS NIH HHS R35 GM134886NIGMS NIH HHS R35 GM142916
6 · The paper itself

Abstract

Gametogenesis is an evolutionarily conserved developmental program whereby a diploid progenitor cell undergoes meiosis and cellular remodeling to differentiate into haploid gametes, the precursors for sexual reproduction. Even in the simple eukaryotic organism Saccharomyces cerevisiae, the meiotic transcriptome is very rich and complex, thereby necessitating new tools for functional studies. Here, we report the construction of 5 stage-specific, inducible complementary DNA libraries from meiotic cells that represent over 84% of the genes found in the budding yeast genome. We employed computational strategies to detect endogenous meiotic transcript isoforms as well as library-specific gene truncations. Furthermore, we developed a robust screening pipeline to test the effect of each complementary DNA on competitive fitness. Our multiday proof-of-principle time course revealed 877 complementary DNAs that were detrimental for competitive fitness when overexpressed. The list included mitochondrial proteins that cause dose-dependent disruption of cellular respiration as well as library-specific gene truncations that expose a dominant negative effect on competitive growth. Together, these high-quality complementary DNA libraries provide an important tool for systematically identifying meiotic genes, transcript isoforms, and protein domains that are important for a specific biological function.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA, ComplementaryGene LibraryMeiosisMitochondrial ProteinsDNA, ComplementaryMitochondrial ProteinsSaccharomyces cerevisiae ProteinscDNA librarycompetitive fitnessgametogenesisgene truncationsmeiosismitochondria

Identifiers

PMID35471663
PMCPMC9157139
OpenAlexW4224928219

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.