Evidence map›Paper›PMID 35474870›Full record

ArticleCell reports methods2022

Motif-centric phosphoproteomics to target kinase-mediated signaling pathways.

Chia-Feng Tsai, Kosuke Ogata, Naoyuki Sugiyama, Yasushi Ishihama

Open access · goldAbstract read
In one paragraph

Article in Cell reports methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Covalent inhibition ofiScience · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. The fitness cost of spurious phosphorylation.bioRxiv : the preprint server for biology · 2023
    Article
  8. Journal of proteome research · 2023
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Chia-Feng TsaiGraduate School of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan.
Kosuke OgataGraduate School of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan.
Naoyuki SugiyamaGraduate School of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan.
Yasushi IshihamaGraduate School of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan.
Kyoto University · JPKyoto Pharmaceutical University · JPNational Institute of Biomedical Innovation, Health and Nutrition · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identifying cellular phosphorylation pathways based on kinase-substrate relationships is a critical step to understanding the regulation of physiological functions in cells. Mass spectrometry-based phosphoproteomics workflows have made it possible to comprehensively collect information on individual phosphorylation sites in a variety of samples. However, there is still no generic approach to uncover phosphorylation networks based on kinase-substrate relationships in rare cell populations. Here, we describe a motif-centric phosphoproteomics approach combined with multiplexed isobaric labeling, in which

Indexed as

PhosphopeptidesSignal TransductionMass SpectrometryPhosphorylationPhosphopeptidesboosting MS signalEGFR signaling networkin vitro kinase reactionisobaric tagkinase-substrate relationshipmotif-centricphosphopeptide enrichmentphosphoproteomeTMT quantitationtyrosine phosphoproteome

Identifiers

PMID35474870
PMCPMC9017188
OpenAlexW4220808506

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.