Evidence map›Paper›PMID 35484403›Full record

ArticleCommunications biology2022

Density fluctuations, homeostasis, and reproduction effects in bacteria.

Shahla Nemati, Abhyudai Singh, Scott D Dhuey, Armando McDonald, Daniel M Weinreich, Andreas E Vasdekis

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Near-zero photon bioimaging by fusing deep learning and ultralow-light microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Shahla NematiDepartment of Physics, University of Idaho, Moscow, ID, USA.
Abhyudai SinghElectrical and Computer Engineering, University of Delaware, Newark, DE, USA.ORCID 0000-0002-1451-2838
Scott D DhueyMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Armando McDonaldDepartment of Forest, Rangeland and Fire Sciences, University of Idaho, Moscow, ID, USA.ORCID 0000-0001-5877-4082
Daniel M WeinreichDepartment of Ecology and Evolutionary Biology, Brown University, Providence, RI, USA.
Andreas E VasdekisDepartment of Physics, University of Idaho, Moscow, ID, USA. andreasv@uidaho.edu.ORCID 0000-0003-4315-1047
University of Idaho · USBrown University · USLawrence Berkeley National Laboratory · USUniversity of Delaware · US

Funding

Consequences and Control of Randomness in Timing of Intracellular EventsR01GM124446 · NIGMS · UNIVERSITY OF DELAWARE · PI SINGH, ABHYUDAI · 2017 to 2020
$914k
NIGMS NIH HHS R01 GM124446
6 · The paper itself

Abstract

Single-cells grow by increasing their biomass and size. Here, we report that while mass and size accumulation rates of single Escherichia coli cells are exponential, their density and, thus, the levels of macromolecular crowding fluctuate during growth. As such, the average rates of mass and size accumulation of a single cell are generally not the same, but rather cells differentiate into increasing one rate with respect to the other. This differentiation yields a density homeostasis mechanism that we support mathematically. Further, we observe that density fluctuations can affect the reproduction rates of single cells, suggesting a link between the levels of macromolecular crowding with metabolism and overall population fitness. We detail our experimental approach and the "invisible" microfluidic arrays that enabled increased precision and throughput. Infections and natural communities start from a few cells, thus, emphasizing the significance of density-fluctuations when taking non-genetic variability into consideration.

Indexed as

Escherichia coliReproductionHomeostasisMacromolecular SubstancesMacromolecular Substances

Identifiers

PMID35484403
PMCPMC9050864
OpenAlexW4224981598

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.