Evidence map›Paper›PMID 35510793›Full record

ArticleMolecular ecology2022

A targeted approach to investigating immune genes of an iconic Australian marsupial.

Luke W Silver, Yuanyuan Cheng, Bonnie L Quigley, Amy Robbins, Peter Timms, Carolyn J Hogg, Katherine Belov

Open access · hybridAbstract read
In one paragraph

Article in Molecular ecology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
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  5. Article
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  7. Article
  8. Epidemiology, Transmission Mode, and Pathogenesis ofAnimals : an open access journal from MDPI · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Luke W SilverSchool of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0002-1718-5756
Yuanyuan ChengSchool of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, Australia.
Bonnie L QuigleyGenecology Research Centre, University of the Sunshine Coast, Sippy Downs, Queensland, Australia.ORCID 0000-0003-3787-0993
Amy RobbinsGenecology Research Centre, University of the Sunshine Coast, Sippy Downs, Queensland, Australia.ORCID 0000-0001-9231-0636
Peter TimmsGenecology Research Centre, University of the Sunshine Coast, Sippy Downs, Queensland, Australia.ORCID 0000-0002-1682-0025
Carolyn J HoggSchool of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0002-6328-398X
Katherine BelovSchool of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0002-9762-5554
The University of Sydney · AUUniversity of the Sunshine Coast · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disease is a contributing factor to the decline of wildlife populations across the globe. Koalas, iconic yet declining Australian marsupials, are predominantly impacted by two pathogens, Chlamydia and koala retrovirus. Chlamydia is an obligate intracellular bacterium and one of the most widespread sexually transmitted infections in humans worldwide. In koalas, Chlamydia infections can present as asymptomatic or can cause a range of ocular and urogenital disease signs, such as conjunctivitis, cystitis and infertility. In this study, we looked at differences in response to Chlamydia in two northern populations of koalas using a targeted gene sequencing of 1209 immune genes in addition to genome-wide reduced representation data. We identified two MHC Class I genes associated with Chlamydia disease progression as well as 25 single nucleotide polymorphisms across 17 genes that were associated with resolution of Chlamydia infection. These genes are involved in the innate immune response (TLR5) and defence (TLR5, IFNγ, SERPINE1, STAT2 and STX4). This study deepens our understanding of the role that genetics plays in disease progression in koalas and leads into future work that will use whole genome resequencing of a larger sample set to investigate in greater detail regions identified in this study. Elucidation of the role of host genetics in disease progression and resolution in koalas will directly contribute to better design of Chlamydia vaccines and management of koala populations which have recently been listed as "endangered."

Indexed as

ChlamydiaChlamydia InfectionsMarsupialiaPhascolarctidaeAnimalsAustraliaDisease ProgressionToll-Like Receptor 5Toll-Like Receptor 5Chlamydiaconservation genomicsGWASkoalawildlife disease

Identifiers

PMID35510793
PMCPMC9325493
OpenAlexW4229048550

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.