Evidence map›Paper›PMID 35528959›Full record

ArticleF1000Research2021

Overlap of vitamin A and vitamin D target genes with CAKUT-related processes.

Ozan Ozisik, Friederike Ehrhart, Chris T Evelo, Alberto Mantovani, Anaïs Baudot

Open access · goldAbstract read
In one paragraph

Article in F1000Research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 4 countries.

Ozan OzisikAix Marseille University, Inserm, MMG, Marseille, 13385, France.
Friederike EhrhartDepartment of Bioinformatics - BiGCaT, Maastricht University, Maastricht, 6200 MD, The Netherlands.ORCID 0000-0002-7770-620X
Chris T EveloDepartment of Bioinformatics - BiGCaT, Maastricht University, Maastricht, 6200 MD, The Netherlands.ORCID 0000-0002-5301-3142
Alberto MantovaniIstituto Superiore di Sanità, Rome, 00161, Italy.
Anaïs BaudotAix Marseille University, Inserm, MMG, Marseille, 13385, France.ORCID 0000-0003-0885-7933
Inserm · FRMaastricht University · NLIstituto Superiore di Sanità · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Congenital Anomalies of the Kidney and Urinary Tract (CAKUT) are a group of abnormalities affecting the kidneys and their outflow tracts. CAKUT patients display a large clinical variability as well as a complex aetiology. Only 5% to 20% of the cases have a monogenic origin. It is thereby suspected that interactions of both genetic and environmental factors contribute to the disease. Vitamins are among the environmental factors that are considered for CAKUT aetiology. In this study, we aimed to investigate whether vitamin A or vitamin D could have a role in CAKUT aetiology. For this purpose we collected vitamin A and vitamin D target genes and computed their overlap with CAKUT-related gene sets. We observed limited overlap between vitamin D targets and CAKUT-related gene sets. We however observed that vitamin A target genes significantly overlap with multiple CAKUT-related gene sets, including CAKUT causal and differentially expressed genes, and genes involved in renal system development. Overall, these results indicate that an excess or deficiency of vitamin A might be relevant to a broad range of urogenital abnormalities.

Indexed as

Urinary TractVitamin AFemaleHumansKidneyMaleUrogenital AbnormalitiesVesico-Ureteral RefluxVitamin DVitaminsVitamin AVitamin DVitaminsCAKUTenvironmental factornutrientsrenal developmentvitamin Avitamin D

Identifiers

PMID35528959
PMCPMC9051587
OpenAlexW3162144437

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.