Evidence map›Paper›PMID 35534989›Full record

ArticlePlant biotechnology journal2022

Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea.

Rutwik Barmukh, Manish Roorkiwal, Vanika Garg, Aamir W Khan, Liam German, Deepa Jaganathan, Annapurna Chitikineni, Jana Kholova, Himabindu Kudapa, Kaliamoorthy Sivasakthi and 6 more

Erratum issuedAbstract read
In one paragraph

Article in Plant biotechnology journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  9. Corrigendum.Plant biotechnology journal · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Rutwik BarmukhCentre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.ORCID 0000-0002-2740-8992
Manish RoorkiwalCentre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.ORCID 0000-0001-6595-281X
Vanika GargCentre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.ORCID 0000-0001-6446-4603
Aamir W KhanCentre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Liam GermanCentre for Plant Science, School of Biology, University of Leeds, Leeds, UK.
Deepa JaganathanCentre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Annapurna ChitikineniCentre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Jana KholovaCrop Physiology and Modelling, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Himabindu KudapaCentre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Kaliamoorthy SivasakthiCrop Physiology and Modelling, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Srinivasan SamineniCrop Breeding, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Sandip M KaleCentre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Pooran M GaurThe UWA Institute of Agriculture, The University of Western Australia, Perth, Western Australia, Australia.
Someswar Rao SagurthiDepartment of Genetics, Osmania University, Hyderabad, India.
Yoselin Benitez-AlfonsoCentre for Plant Science, School of Biology, University of Leeds, Leeds, UK.ORCID 0000-0001-9779-0413
Rajeev K VarshneyCentre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.ORCID 0000-0002-4562-9131

Funding

Biotechnology and Biological Sciences Research Council BB/R021171/1Medical Research Council MR/T04263X/1
6 · The paper itself

Abstract

Chickpea production is vulnerable to drought stress. Identifying the genetic components underlying drought adaptation is crucial for enhancing chickpea productivity. Here, we present the fine mapping and characterization of 'QTL-hotspot', a genomic region controlling chickpea growth with positive consequences on crop production under drought. We report that a non-synonymous substitution in the transcription factor CaTIFY4b regulates seed weight and organ size in chickpea. Ectopic expression of CaTIFY4b in Medicago truncatula enhances root growth under water deficit. Our results suggest that allelic variation in 'QTL-hotspot' improves pre-anthesis water use, transpiration efficiency, root architecture and canopy development, enabling high-yield performance under terminal drought conditions. Gene expression analysis indicated that CaTIFY4b may regulate organ size under water deficit by modulating the expression of GRF-INTERACTING FACTOR1 (GIF1), a transcriptional co-activator of Growth-Regulating Factors. Taken together, our study offers new insights into the role of CaTIFY4b and on diverse physiological and molecular mechanisms underpinning chickpea growth and production under specific drought scenarios.

Indexed as

CicerDroughtsAdaptation, PhysiologicalGenetic VariationTranscription FactorsWaterTranscription FactorsWaterlegumesroot system architectureseed weightterminal droughttranspiration efficiencyvigour

Identifiers

PMID35534989
PMCPMC9398337

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.