Evidence map›Paper›PMID 35551312›Full record

ArticlePloS one2022

The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato.

Chellappan Padmanabhan, Yi Zheng, Md Shamimuzzaman, Jennifer R Wilson, Andrea Gilliard, Zhangjun Fei, Kai-Shu Ling

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Chellappan PadmanabhanU.S. Department of Agriculture-Agricultural Research Service, U.S. Vegetable Laboratory, Charleston, SC, United States of America.
Yi ZhengBoyce Thompson Institute, Cornell University, Ithaca, NY, United States of America.
Md ShamimuzzamanU.S. Department of Agriculture-Agricultural Research Service, U.S. Vegetable Laboratory, Charleston, SC, United States of America.
Jennifer R WilsonU.S. Department of Agriculture-Agricultural Research Service, U.S. Vegetable Laboratory, Charleston, SC, United States of America.
Andrea GilliardU.S. Department of Agriculture-Agricultural Research Service, U.S. Vegetable Laboratory, Charleston, SC, United States of America.
Zhangjun FeiBoyce Thompson Institute, Cornell University, Ithaca, NY, United States of America.
Kai-Shu LingU.S. Department of Agriculture-Agricultural Research Service, U.S. Vegetable Laboratory, Charleston, SC, United States of America.ORCID 0000-0002-6426-4692
Agricultural Research Service · USCornell University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tomato yellow leaf curl virus (TYLCV), a monopartite begomovirus in the family Geminiviridae, is efficiently transmitted by the whitefly, Bemisia tabaci, and causes serious economic losses to tomato crops around the world. TYLCV-infected tomato plants develop distinctive symptoms of yellowing and leaf upward cupping. In recent years, excellent progress has been made in the characterization of TYLCV C4 protein function as a pathogenicity determinant in experimental plants, including Nicotiana benthamiana and Arabidopsis thaliana. However, the molecular mechanism leading to disease symptom development in the natural host plant, tomato, has yet to be characterized. The aim of the current study was to generate transgenic tomato plants expressing the TYLCV C4 gene and evaluate differential gene expression through comparative transcriptome analysis between the transgenic C4 plants and the transgenic green fluorescent protein (Gfp) gene control plants. Transgenic tomato plants expressing TYLCV C4 developed phenotypes, including leaf upward cupping and yellowing, that are similar to the disease symptoms expressed on tomato plants infected with TYLCV. In a total of 241 differentially expressed genes identified in the transcriptome analysis, a series of plant development-related genes, including transcription factors, glutaredoxins, protein kinases, R-genes and microRNA target genes, were significantly altered. These results provide further evidence to support the important function of the C4 protein in begomovirus pathogenicity. These transgenic tomato plants could serve as basic genetic materials for further characterization of plant receptors that are interacting with the TYLCV C4.

Indexed as

BegomovirusHemipteraSolanum lycopersicumAnimalsGenes, DevelopmentalPhenotypePlant DiseasesPlants, Genetically Modified

Identifiers

PMID35551312
PMCPMC9098041
OpenAlexW4280547734

What Socratic holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.