Evidence map›Paper›PMID 35584229›Full record

ArticleScience translational medicine2022

Ex silico engineering of cystine-dense peptides yielding a potent bispecific T cell engager.

Zachary R Crook, Emily J Girard, Gregory P Sevilla, Mi-Youn Brusniak, Peter B Rupert, Della J Friend, Mesfin M Gewe, Midori Clarke, Ida Lin, Raymond Ruff and 8 more

Open access · greenAbstract read
In one paragraph

Article in Science translational medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Directed evolution identifies high-affinity cystine-knot peptide agonists and antagonists of Wnt/β-catenin signaling.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Zachary R CrookClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0002-1142-9748
Emily J GirardClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0003-1857-0194
Gregory P SevillaClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0002-6590-9413
Mi-Youn BrusniakClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0003-3950-1614
Peter B RupertBasic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0003-1011-0302
Della J FriendBasic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Mesfin M GeweBasic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0001-9587-7283
Midori ClarkeClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0002-2402-108X
Ida LinClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Raymond RuffClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0002-7189-1221
Fiona PakiamClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0001-6292-1137
Tinh-Doan PhiBlaze Bioscience Inc., Seattle, WA 98109, USA.
Ashok BandaranayakeClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Colin E CorrentiClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0003-3710-9619
Andrew J MhyreClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0002-9206-3150
Natalie W NairnBlaze Bioscience Inc., Seattle, WA 98109, USA.ORCID 0000-0003-1293-345X
Roland K StrongBasic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0002-1338-2189
James M OlsonClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.ORCID 0000-0001-5990-6534
Fred Hutch Cancer Center · USBlaze Bioscience (United States) · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Testing a cancer patient-specific SARS-CoV-2 vaccine in chemotherapy- and radiation-treated pediatric brain tumor mouse modelsR01CA114567 · NCI · SEATTLE CHILDREN'S HOSPITAL · PI OLSON, JAMES M · 2006 to 2023
$4.9M
Engineering Knotted Peptide Therapeutics for Pediatric Brain Tumor PatientsR01CA223674 · NCI · SEATTLE CHILDREN'S HOSPITAL · PI OLSON, JAMES M · 2018 to 2022
$3.6M
Combinations of Synergistic Bispecific Human Antibodies: A Novel Strategy for the Treatment of NeuroblastomaU01CA232490 · NCI · SEATTLE CHILDREN'S HOSPITAL · PI OLSON, JAMES M · 2018 to 2020
$2.4M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA114567NCI NIH HHS R01 CA223674NCI NIH HHS U01 CA232490NIH HHS S10 OD020069NIH HHS S10 OD028685
6 · The paper itself

Abstract

Cystine-dense peptides (CDPs) are a miniprotein class that can drug difficult targets with high affinity and low immunogenicity. Tools for their design, however, are not as developed as those for small-molecule and antibody drugs. CDPs have diverse taxonomic origins, but structural characterization is lacking. Here, we adapted Iterative Threading ASSEmbly Refinement (I-TASSER) and Rosetta protein modeling software for structural prediction of 4298 CDP scaffolds and performed in silico prescreening for CDP binders to targets of interest. Mammalian display screening of a library of docking-enriched, methionine and tyrosine scanned (DEMYS) CDPs against PD-L1 yielded binders from four distinct CDP scaffolds. One was affinity-matured, and cocrystallography yielded a high-affinity (

Indexed as

Antibodies, BispecificT-LymphocytesAnimalsB7-H1 AntigenCD3 ComplexCystineDisease Models, AnimalHumansMammalsMicePeptidesAntibodies, BispecificB7-H1 AntigenCD3 ComplexCystinePeptides

Identifiers

PMID35584229
PMCPMC10118748
OpenAlexW4280515810

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.