Evidence map›Paper›PMID 35585498›Full record

ArticleBMC plant biology2022

Genome-wide identification of sugar transporter gene family in Brassicaceae crops and an expression analysis in the radish.

Tongjin Liu, Chonglai Bao, Qiuyan Ban, Changyi Wang, Tianhua Hu, Jinglei Wang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tongjin LiuCollege of Horticulture, Jinling Institute of Technology, Nanjing, 210038, China.
Chonglai BaoInstitute of Vegetable, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
Qiuyan BanCollege of Horticulture, Jinling Institute of Technology, Nanjing, 210038, China.
Changyi WangCollege of Horticulture, Jinling Institute of Technology, Nanjing, 210038, China.
Tianhua HuInstitute of Vegetable, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
Jinglei WangInstitute of Vegetable, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China. syauwjl@163.com.
Jinling Institute of Technology · CNZheJiang Academy of Agricultural Sciences · CN

Funding

China Agriculture Research System CARS-23-A09National Natural Science Foundation of China 31801858New Variety Breeding Project of the Major Science Technology Projects of Zhejiang 2021C02065Research Foundation for Talented Scholars of Jinling Institute of Technology jit-b-202009Research Foundation Incubation Project of Jinling Institute of Technology jit-fhxm-202113
6 · The paper itself

Abstract

backgroundSugar not only is an important biomacromolecule that plays important roles in plant growth, development, and biotic and abiotic stress tolerance but also provides a skeleton for other macromolecules, such as proteins and nucleic acids. Sugar transporter proteins (STPs) play essential roles in plant sugar transport and ultimately affect the abovementioned life processes. However, the evolutionary dynamics of this important gene family in Brassicaceae crops are still largely unknown, and the functional differentiation of radish STP genes remains unclear.

resultsIn the present study, a comparative genomic study of STP genes in five representative Brassicaceae crops was conducted, and a total of 25, 25, 28, 36 and 49 STP genes were individually identified in Raphanus sativus (Rs), Brassica oleracea (Bo), B. rapa (Br), B. napus (Bn) and B. juncea (Bj), which were divided into four clades by phylogenetic analysis. The number of STP genes was no direct correlation with genome size and the total number of coding genes in Brassicaceae crops, and their physical and chemical properties showed no significant difference. Expression analysis showed that radish STP genes play vital roles not only in flower and seedpod development but also under heavy metal (cadmium, chromium and lead), NaCl and PEG-6000 stresses, Agrobacterium tumefaciens infection, and exogenous sugar treatment. RsSTP13.2 was significantly upregulated in the resistant radish cultivar by A. tumefaciens infection and induced by heavy metal, NaCl and PEG-6000 stress, indicating that it is involved in resistance to both biotic and abiotic stress in radish.

conclusionsThe present study provides insights into the evolutionary patterns of the STP gene family in Brassicaceae genomes and provides a theoretical basis for future functional analysis of STP genes in Brassicaceae crops.

Indexed as

BrassicaceaeMetals, HeavyRaphanusEvolution, MolecularGene Expression Regulation, PlantGenome, PlantPhylogenyPlant ProteinsSodium ChlorideStress, PhysiologicalSugarsMetals, HeavyPlant ProteinsSodium ChlorideSugarsBiotic and abiotic stressExpression analysisGene familyRadishSugar transporter proteins (STPs)

Identifiers

PMID35585498
PMCPMC9115943
OpenAlexW4280574696

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.