Evidence map›Paper›PMID 35599267›Full record

ArticleScientific reports2022

iTRAQ proteomics of sentinel lymph nodes for identification of extracellular matrix proteins to flag metastasis in early breast cancer.

Sheetal Pathania, Mohd Imran Khan, Sabyasachi Bandyopadhyay, Suneet Shekhar Singh, Komal Rani, Tanvi Ramesh Parashar, Jnaneshwari Jayaram, Piyush Ranjan Mishra, Anurag Srivastava, Sandeep Mathur and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Sheetal PathaniaDepartment of Biophysics, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Mohd Imran KhanDepartment of Biophysics, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Sabyasachi BandyopadhyayProteomics Lab, Centralized Core Research Facility, All India Institute of Medical Sciences, New Delhi, 110029, India.
Suneet Shekhar SinghProteomics Lab, Centralized Core Research Facility, All India Institute of Medical Sciences, New Delhi, 110029, India.
Komal RaniDepartment of Biophysics, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Tanvi Ramesh ParasharDepartment of Biophysics, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Jnaneshwari JayaramDepartment of Surgery, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Piyush Ranjan MishraDepartment of Surgery, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Anurag SrivastavaDepartment of Surgery, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Sandeep MathurDepartment of Pathology, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Smriti HariDepartment of Radiology, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Perumal VanamailDepartment of Obstetrics and Gynaecology, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India.
Gururao HariprasadDepartment of Biophysics, All India Institute of Medical Sciences, Ansari nagar, New Delhi, 110029, India. g.hariprasad@rediffmail.com.
All India Institute of Medical Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Patients with early breast cancer are affected by metastasis to axillary lymph nodes. Metastasis to these nodes is crucial for staging and quality of surgery. Sentinel Lymph Node Biopsy that is currently used to assess lymph node metastasis is not effective. This necessitates identification of biomarkers that can flag metastasis. Early stage breast cancer patients were recruited. Surgical resection of breast was followed by identification of sentinel lymph nodes. Fresh frozen section biopsy was used to assign metastatic and non-metastatic sentinel lymph nodes. Discovery phase included iTRAQ proteomics coupled with mass spectrometric analysis to identify differentially expressed proteins. Data is available via ProteomeXchange with identifier PXD027668. Validation was done by bioinformatic analysis and ELISA. There were 2398 unique protein groups and 109 differentially expressed proteins comparing metastatic and non-metastatic lymph nodes. Forty nine proteins were up-regulated, and sixty proteins that were down regulated in metastatic group. Bioinformatic analysis showed ECM-receptor interaction pathways to be implicated in lymph node metastasis. ELISA confirmed up-regulation of ECM proteins in metastatic lymph nodes. ECM proteins have requisite parameters to be developed as a diagnostic tool to assess status of sentinel lymph nodes to guide surgical intervention in early breast cancer.

Indexed as

Breast NeoplasmsSentinel Lymph NodeAxillaExtracellular Matrix ProteinsFemaleHumansLymphatic MetastasisLymph Node ExcisionLymph NodesNeoplasm StagingProteomicsSentinel Lymph Node BiopsyExtracellular Matrix Proteins

Identifiers

PMID35599267
PMCPMC9124668
OpenAlexW4281256117

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.