Evidence map›Paper›PMID 35599628›Full record

ReviewMolecular ecology resources2022

A road map for in vivo evolution experiments with blood-borne parasitic microbes.

Ruth Rodríguez-Pastor, Yarden Shafran, Nadav Knossow, Ricardo Gutiérrez, Shimon Harrus, Luis Zaman, Richard E Lenski, Jeffrey E Barrick, Hadas Hawlena

Abstract readReview
In one paragraph

Review in Molecular ecology resources, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Genome Analysis of ST1Infection and drug resistance · 2023
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ruth Rodríguez-PastorJacob Blaustein Center for Scientific Cooperation, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel.ORCID https://orcid.org/0000-0001-8435-6386
Yarden ShafranMitrani Department of Desert Ecology, Swiss Institute for Dryland Environmental and Energy Research, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel.
Nadav KnossowMitrani Department of Desert Ecology, Swiss Institute for Dryland Environmental and Energy Research, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel.
Ricardo GutiérrezKoret School of Veterinary Medicine, Faculty of Agricultural, Nutritional and Environmental Sciences, The Hebrew University of Jerusalem, Rehovot, Israel.ORCID https://orcid.org/0000-0001-6988-0251
Shimon HarrusKoret School of Veterinary Medicine, Faculty of Agricultural, Nutritional and Environmental Sciences, The Hebrew University of Jerusalem, Rehovot, Israel.ORCID https://orcid.org/0000-0003-0542-207X
Luis ZamanDepartment of Ecology and Evolutionary Biology, The Center for the Study of Complex Systems (CSCS), University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0001-6838-7385
Richard E LenskiDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.ORCID https://orcid.org/0000-0002-1064-8375
Jeffrey E BarrickDepartment of Molecular Biosciences, The University of Texas Austin, Austin, Texas, USA.ORCID https://orcid.org/0000-0003-0888-7358
Hadas HawlenaMitrani Department of Desert Ecology, Swiss Institute for Dryland Environmental and Energy Research, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel.ORCID https://orcid.org/0000-0002-0634-2920

Funding

Ecology of Infectious Diseases grant from the National Science foundation under the auspices of U.S.-Israel Binational Science Foundation (NSF-BSF) DEB-1813069The Israel Science Foundation (ISF) 1391/15
6 · The paper itself

Abstract

Laboratory experiments in which blood-borne parasitic microbes evolve in their animal hosts offer an opportunity to study parasite evolution and adaptation in real time and under natural settings. The main challenge of these experiments is to establish a protocol that is both practical over multiple passages and accurately reflects natural transmission scenarios and mechanisms. We provide a guide to the steps that should be considered when designing such a protocol, and we demonstrate its use via a case study. We highlight the importance of choosing suitable ancestral genotypes, treatments, number of replicates per treatment, types of negative controls, dependent variables, covariates, and the timing of checkpoints for the experimental design. We also recommend specific preliminary experiments to determine effective methods for parasite quantification, transmission, and preservation. Although these methodological considerations are technical, they also often have conceptual implications. To this end, we encourage other researchers to design and conduct in vivo evolution experiments with blood-borne parasitic microbes, despite the challenges that the work entails.

Indexed as

ParasitesAdaptation, PhysiologicalAnimalsBiological EvolutionBartonella spp.experimental evolutionhost-parasite adaptationin vivo experimentsmicrobial pathogenspopulation bottleneckssequential passages

Identifiers

PMID35599628
PMCPMC9796859

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.