Evidence map›Paper›PMID 35613596›Full record

ArticleCell reports2022

Sites of vulnerability in HCV E1E2 identified by comprehensive functional screening.

Jennifer M Pfaff-Kilgore, Edgar Davidson, Kathryn Kadash-Edmondson, Mayda Hernandez, Erin Rosenberg, Ross Chambers, Matteo Castelli, Nicola Clementi, Nicasio Mancini, Justin R Bailey and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  9. The red algaProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Review
  11. Article
  12. Hepatitis C virus modified sE2Journal of virology · 2024
    Article
  13. Signatures of VNature communications · 2023
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Pseudotyped Virus for Flaviviridae.Advances in experimental medicine and biology · 2023
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Jennifer M Pfaff-KilgoreIntegral Molecular, Inc., 3711 Market St, Philadelphia, PA 19104, USA.
Edgar DavidsonIntegral Molecular, Inc., 3711 Market St, Philadelphia, PA 19104, USA.
Kathryn Kadash-EdmondsonIntegral Molecular, Inc., 3711 Market St, Philadelphia, PA 19104, USA.
Mayda HernandezIntegral Molecular, Inc., 3711 Market St, Philadelphia, PA 19104, USA.
Erin RosenbergIntegral Molecular, Inc., 3711 Market St, Philadelphia, PA 19104, USA.
Ross ChambersIntegral Molecular, Inc., 3711 Market St, Philadelphia, PA 19104, USA.
Matteo CastelliLaboratory of Medical Microbiology and Virology, University Vita-Salute San Raffaele, Milan, Italy.
Nicola ClementiLaboratory of Medical Microbiology and Virology, University Vita-Salute San Raffaele, Milan, Italy; IRCSS San Raffaele Hospital, Milan, Italy.
Nicasio ManciniLaboratory of Medical Microbiology and Virology, University Vita-Salute San Raffaele, Milan, Italy; IRCSS San Raffaele Hospital, Milan, Italy.
Justin R BaileyDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
James E CroweDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232, USA; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Mansun LawDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Benjamin J DoranzIntegral Molecular, Inc., 3711 Market St, Philadelphia, PA 19104, USA. Electronic address: bdoranz@integralmolecular.com.
Integral Molecular (United States) · USVita-Salute San Raffaele University · ITJohns Hopkins University · USScripps Research Institute · USVanderbilt University Medical Center · US

Funding

The development and pre-clinical assessment of novel HCV vaccines to generate T and B cell immunityU19AI159822 · NIAID · JOHNS HOPKINS UNIVERSITY · PI COX, ANDREA L · 2021 to 2025
$14.4M
Molecular and structural characterization of broadly neutralizing anti-HCV antibodiesR01AI127469 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Justin Richard Bailey · 2017 to 2026
$6.8M
Novel HCV vaccine antigens targeting conserved neutralizing epitopesU19AI123861 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI LAW, MANSUN · 2016 to 2020
$4.6M
Structure and function of Hepacivirus envelope glycoproteinR01AI123365 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI LAW, MANSUN, WILSON, IAN A · 2016 to 2020
$3.1M
Development of standardized immunoassays and virus panels for HCV vaccine researchR24AI158193 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BAILEY, JUSTIN RICHARD, LAW, MANSUN · 2021 to 2023
$1.7M
Development of a single-cell antibody cloning protocol for isolation of hepatitis C virus-specific broadly neutralizing antibodiesR21AI151353 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BAILEY, JUSTIN RICHARD · 2020 to 2021
$450k
NIAID NIH HHS HHSN272201400058CNIAID NIH HHS R01 AI123365NIAID NIH HHS R01 AI127469NIAID NIH HHS R21 AI151353NIAID NIH HHS R24 AI158193NIAID NIH HHS U19 AI123861NIAID NIH HHS U19 AI159822
6 · The paper itself

Abstract

The E1 and E2 envelope proteins of hepatitis C virus (HCV) form a heterodimer that drives virus-host membrane fusion. Here, we analyze the role of each amino acid in E1E2 function, expressing 545 individual alanine mutants of E1E2 in human cells, incorporating them into infectious viral pseudoparticles, and testing them against 37 different monoclonal antibodies (MAbs) to ascertain full-length translation, folding, heterodimer assembly, CD81 binding, viral pseudoparticle incorporation, and infectivity. We propose a model describing the role of each critical residue in E1E2 functionality and use it to examine how MAbs neutralize infection by exploiting functionally critical sites of vulnerability on E1E2. Our results suggest that E1E2 is a surprisingly fragile protein complex where even a single alanine mutation at 92% of positions disrupts its function. The amino-acid-level targets identified are highly conserved and functionally critical and can be exploited for improved therapies and vaccines.

Indexed as

HepacivirusHepatitis CAlanineAntibodies, MonoclonalHumansViral Envelope ProteinsVirus InternalizationAlanineAntibodies, MonoclonalViral Envelope ProteinsCP: MicrobiologyE1E2 mutation libraryE1E2 structure-functionflaviviridaehepatitis C virushepatitis C virus infectivity

Identifiers

PMID35613596
PMCPMC9281441
OpenAlexW4281393433

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.