Evidence map›Paper›PMID 35625354›Full record

ArticleBiology2022

Fusion Genes in Prostate Cancer: A Comparison in Men of African and European Descent.

Rebecca Morgan, Dulcie Keeley, E Starr Hazard, Emma H Allott, Bethany Wolf, Stephen J Savage, Chanita Hughes Halbert, Sebastiano Gattoni-Celli, Gary Hardiman

Open access · goldAbstract read
In one paragraph

Article in Biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Rebecca MorganFaculty of Medicine, Health and Life Sciences, School of Biological Sciences, Institute for Global Food Security (IGFS), Queen's University Belfast, (QUB), Belfast BT9 5DL, UK.
Dulcie KeeleyFaculty of Medicine, Health and Life Sciences, School of Biological Sciences, Institute for Global Food Security (IGFS), Queen's University Belfast, (QUB), Belfast BT9 5DL, UK.
E Starr HazardAcademic Affairs Faculty, Medical University of South Carolina (MUSC), Charleston, SC 29425, USA.
Emma H AllottPatrick G. Johnston Centre for Cancer Research, QUB, Belfast BT9 7AE, UK.
Bethany WolfDepartment of Public Health Sciences, Medical University of South Carolina (MUSC), Charleston, SC 29425, USA.ORCID 0000-0002-7124-5158
Stephen J SavageDepartment of Urology, Medical University of South Carolina (MUSC), Charleston, SC 29425, USA.
Chanita Hughes HalbertDepartment of Population and Public Health Sciences, University of Southern California, Los Angeles, CA 90033, USA.
Sebastiano Gattoni-CelliRalph H. Johnson VA Medical Center, Charleston, SC 29425, USA.
Gary HardimanFaculty of Medicine, Health and Life Sciences, School of Biological Sciences, Institute for Global Food Security (IGFS), Queen's University Belfast, (QUB), Belfast BT9 5DL, UK.ORCID 0000-0003-4558-0400
Medical University of South Carolina · USQueen's University Belfast · GBCancer Research UK · GBUniversity of Southern California · US

Funding

Sociobiological Responses to Stress in Prostate Cancer SurvivorsU54MD010706 · NIMHD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LENERT, LESLIE A. · 2016 to 2020
$8.0M
The Genetic Basis of Opioid Dependence Vulnerablility in a Rodent ModelU01DA045300 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Christine Cheng, Dongjun Chung · 2018 to 2026
$6.1M
NIDA NIH HHS 1U01DA045300-01A1NIMHD NIH HHS U54MD010706-CHH
6 · The paper itself

Abstract

Prostate cancer is one of the most prevalent cancers worldwide, particularly affecting men living a western lifestyle and of African descent, suggesting risk factors that are genetic, environmental, and socioeconomic in nature. In the USA, African American (AA) men are disproportionately affected, on average suffering from a higher grade of the disease and at a younger age compared to men of European descent (EA). Fusion genes are chimeric products formed by the merging of two separate genes occurring as a result of chromosomal structural changes, for example, inversion or trans/cis-splicing of neighboring genes. They are known drivers of cancer and have been identified in 20% of cancers. Improvements in genomics technologies such as RNA-sequencing coupled with better algorithms for prediction of fusion genes has added to our knowledge of specific gene fusions in cancers. At present AA are underrepresented in genomic studies of prostate cancer. The primary goal of this study was to examine molecular differences in predicted fusion genes in a cohort of AA and EA men in the context of prostate cancer using computational approaches. RNA was purified from prostate tissue specimens obtained at surgery from subjects enrolled in the study. Fusion gene predictions were performed using four different fusion gene detection programs. This identified novel putative gene fusions unique to AA and suggested that the fusion gene burden was higher in AA compared to EA men.

Indexed as

African AmericanAfrican descentbiomarkersEuropean Americanfusion genesprostate cancerRNA-sequencing

Identifiers

PMID35625354
PMCPMC9137560
OpenAlexW4224285386

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.