Evidence map›Paper›PMID 35632597›Full record

ArticleViruses2022

Recent Zoonotic Spillover and Tropism Shift of a Canine Coronavirus Is Associated with Relaxed Selection and Putative Loss of Function in NTD Subdomain of Spike Protein.

Jordan D Zehr, Sergei L Kosakovsky Pond, Darren P Martin, Kristina Ceres, Gary R Whittaker, Jean K Millet, Laura B Goodman, Michael J Stanhope

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

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  12. Adaptive Evolution of the Spike Protein in Coronaviruses.Molecular biology and evolution · 2023
    Article
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  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Jordan D ZehrInstitute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA.ORCID 0000-0003-2099-4172
Sergei L Kosakovsky PondInstitute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA.ORCID 0000-0003-4817-4029
Darren P MartinComputational Biology Division, Department of Integrative Biomedical Sciences, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Observatory, Cape Town 7549, South Africa.
Kristina CeresDepartment of Public and Ecosystem Health, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-6682-0031
Gary R WhittakerDepartment of Public and Ecosystem Health, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0001-8037-3816
Jean K MilletUnité de Virologie et Immunologie Moléculaires, UVSQ, INRAE, Université Paris-Saclay, 78350 Jouy-en-Josas, France.
Laura B GoodmanDepartment of Public and Ecosystem Health, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-8327-3092
Michael J StanhopeDepartment of Public and Ecosystem Health, Cornell University, Ithaca, NY 14853, USA.
Cornell University · USTemple University · USUniversité de Versailles Saint-Quentin-en-Yvelines · FRUniversity of Cape Town · ZA

Funding

Turning big data analysis infrastructure for HIV researchR01AI134384 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI NEKRUTENKO, ANTON, POND, SERGEI L KOSAKOVSKY · 2017 to 2021
$4.2M
Modeling Epidemic Infectious Diseases Using Sequence AnalysisU01GM110749 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POND, SERGEI L KOSAKOVSKY · 2014 to 2018
$3.0M
Assessment of Zoonotic Risk of Emerging Infections in Companion AnimalsU18FD006993 · FDA · CORNELL UNIVERSITY · PI GOODMAN, LAURA BRUNENGRABER, STANHOPE, MICHAEL J · 2020 to 2024
$984k
FDA HHS 1U18FD006993-01FDA HHS U18 FD006993NIAID NIH HHS R01 AI134384NIGMS NIH HHS U01 GM110749
6 · The paper itself

Abstract

A canine coronavirus (CCoV) has now been reported from two independent human samples from Malaysia (respiratory, collected in 2017-2018; CCoV-HuPn-2018) and Haiti (urine, collected in 2017); these two viruses were nearly genetically identical. In an effort to identify any novel adaptations associated with this apparent shift in tropism we carried out detailed evolutionary analyses of the spike gene of this virus in the context of related

Indexed as

Coronavirus, CanineAnimalsCatsDogsN-Acetylneuraminic AcidSpike Glycoprotein, CoronavirusTropismZoonosesN-Acetylneuraminic AcidSpike Glycoprotein, Coronaviruscanine coronaviruscoronavirus tropism shiftfeline coronavirusrelaxed selection

Identifiers

PMID35632597
PMCPMC9145938
OpenAlexW4225922127

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.