Evidence map›Paper›PMID 35639831›Full record

ArticleNeuro-oncology2022

Comparative single-cell RNA-sequencing profiling of BMP4-treated primary glioma cultures reveals therapeutic markers.

Iris S C Verploegh, Andrea Conidi, Rutger W W Brouwer, Hayri E Balcioglu, Panagiotis Karras, Samira Makhzami, Anne Korporaal, Jean-Christophe Marine, Martine Lamfers, Wilfred F J Van IJcken and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Neuro-oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

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  11. The TGF-β Family in Glioblastoma.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Iris S C VerploeghDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, The Netherlands.ORCID 0000-0001-6383-086X
Andrea ConidiDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, The Netherlands.
Rutger W W BrouwerDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, The Netherlands.ORCID 0000-0001-7524-6230
Hayri E BalciogluDepartment of Medical Oncology, Erasmus Medical Center Cancer Institute, Rotterdam, The Netherlands.
Panagiotis Karras
Samira MakhzamiLaboratory for Molecular Cancer Biology, Center for Cancer Biology, VIB, Leuven, Belgium.
Anne KorporaalDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, The Netherlands.
Jean-Christophe MarineLaboratory for Molecular Cancer Biology, Center for Cancer Biology, VIB, Leuven, Belgium.
Martine LamfersDepartment of Neurosurgery, Erasmus University Medical Center, Rotterdam, The Netherlands.
Wilfred F J Van IJckenDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, The Netherlands.
Sieger LeenstraDepartment of Neurosurgery, Erasmus University Medical Center, Rotterdam, The Netherlands.
Danny HuylebroeckDepartment of Development and Regeneration, KU Leuven, Leuven, Belgium.ORCID 0000-0003-4862-1079
Erasmus MC · NLVIB-KU Leuven Center for Cancer Biology · BEErasmus MC Cancer Institute · NLIHS Markit (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGlioblastoma (GBM) is the most aggressive primary brain tumor. Its cellular composition is very heterogeneous, with cells exhibiting stem-cell characteristics (GSCs) that co-determine therapy resistance and tumor recurrence. Bone Morphogenetic Protein (BMP)-4 promotes astroglial and suppresses oligodendrocyte differentiation in GSCs, processes associated with superior patient prognosis. We characterized variability in cell viability of patient-derived GBM cultures in response to BMP4 and, based on single-cell transcriptome profiling, propose predictive positive and early-response markers for sensitivity to BMP4.

methodsCell viability was assessed in 17 BMP4-treated patient-derived GBM cultures. In two cultures, one highly-sensitive to BMP4 (high therapeutic efficacy) and one with low-sensitivity, response to treatment with BMP4 was characterized. We applied single-cell RNA-sequencing, analyzed the relative abundance of cell clusters, searched for and identified the aforementioned two marker types, and validated these results in all 17 cultures.

resultsHigh variation in cell viability was observed after treatment with BMP4. In three cultures with highest sensitivity for BMP4, a substantial new cell subpopulation formed. These cells displayed decreased cell proliferation and increased apoptosis. Neuronal differentiation was reduced most in cultures with little sensitivity for BMP4. OLIG1/2 levels were found predictive for high sensitivity to BMP4. Activation of ribosomal translation (RPL27A, RPS27) was up-regulated within one day in cultures that were very sensitive to BMP4.

conclusionThe changes in composition of patient-derived GBM cultures obtained after treatment with BMP4 correlate with treatment efficacy. OLIG1/2 expression can predict this efficacy, and upregulation of RPL27A and RPS27 are useful early-response markers.

Indexed as

Brain NeoplasmsGlioblastomaGliomaBiomarkersBone Morphogenetic Protein 4Cell DifferentiationCell ProliferationGene Expression ProfilingHumansNeoplastic Stem CellsRNABiomarkersBMP4 protein, humanBone Morphogenetic Protein 4RNABMPdrug therapyglioblastomasingle-cell RNA-sequencingtumor heterogeneity

Identifiers

PMID35639831
PMCPMC9713526
OpenAlexW4281615985

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.